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9 protocols using ab8470

1

Isolation and Enrichment of Rat Myoblasts

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20-week old male Lewis rats (Chales River, Wilmington, Massachusetts, USA) were euthanized by cardiac exsanguination under isoflurane inhalation anaesthesia. Mb were isolated from hind limb muscle of male Lewis rats as described previously [8 (link)]. A preplate-technique was used for enrichment of Mb [38 (link)]. Briefly, cells were plated into type I collagen-coated flasks (rat tail collagen, Sigma Aldrich, St. Louis, Missouri, USA). For cell culture, Ham’s F10 medium (Gibco, Carlsbad, California, USA) containing 25% FCS (Biochrom GmbH, Berlin, Germany), 1.25% penicillin/streptomycin (P/S) (Biochrom GmbH) and 2.5 ng/ml basic fibroblast growth factor (bFGF) (Peprotech, Hamburg, Germany) was used. After 2 hours, the supernatant containing non-adherent cells was collected and replated in a new coated flask. This step was repeated every 24 h. The third preplated cells were further passaged. Medium was changed every other day. Mb of passage 3 were used for all experiments. Desmin immunofluorescence (ab8470, Abcam, Cambridge, UK) showed a ratio of approximately 95% myoblasts (Fig. 1). Fibroblasts isolated from rat skin via dispase (Sigma Aldrich, St. Louis, Missouri, USA) and collagenase Type II (Biochrom GmbH) served as negative control.
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2

Fixation and Immunostaining of Myofibers

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At room temperature, arrays were fixed in 4% PFA for 15 min (minutes), washed 3 times with PBS and further permeabilized in 0.1% Triton-X100/PBS for 10 min. Subsequently fibers were blocked using 10% goat serum (GS) for 1 h. Myofibers were incubated in primary antibodies Desmin [D33], ab8470 (Abcam) (1:150) overnight. The myofibers were then washed again in PBS before incubation with associated secondary antibody [FluorTM 488 Goat anti-Rabbit IgG H + L, A-11,008 (Thermo Fisher Scientific)] and/or DAPI.
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3

Hydrogel Slice Immunohistochemistry

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Fixed hydrogels were
cut into 250 μm
cross-sectional and longitudinal slices using a high precision vibrating
microtome (7000 smz, Campden Instruments Ltd., UK). The slices were
blocked in 5% (v/v) FBS in PBS for 2 h and then incubated overnight
at 4 °C with primary antibodies that specifically bind to the
proteins Ki67 and desmin (Abcam; ab8470 and ab15580) or myosin heavy
chain IIb (MHC IIb, clone MF20; RnD systems). Unbound primary antibodies
were removed by 3 × 20 min washes in PBS. To visualize the bound
antibodies, the cells were incubated in secondary antibodies labeled
with fluorophores (goat antimouse Alexa 488 and goat antirabbit Alexa
488; Invitrogen). For some experiments, cells/hydrogels were also
incubated in Alexa Fluor 594-phalloidin (Invitrogen). Phalloidin is
a peptide that binds to actin in cells and allows visualization of
cell shape. DAPI was used to label nuclei. Confocal microscopy was
performed using a Zeiss LSM-780 inverted microscope.
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4

Immunohistochemical Analysis of Kidney Sections

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Deparaffinized kidney sections (5 μm thick) were immunostained with antibodies against desmin (ab8470; Abcam, Cambridge, UK), Ki-67 (no. 418071; Nichirei Biosciences, Tokyo, Japan), p-mTOR (no. 293133; Santa Cruz Biotechnology, Santa Cruz, CA), and p-ERK (no. 4376; Cell Signaling Technology, Danvers, MA) according to the instructions for analyzing under a light microscope (Eclipse 80i microscope; Nikon, Tokyo, Japan). For each section, 30 randomly chosen fields were photographed using a digital color camera (DS-Fi2-U3 color camera, Nikon). Using ImageJ, the stained percentage of the target area was then estimated after selecting a glomerular area with desmin staining (14 (link)). The percentage of cells positive for Ki-67 was calculated from the total number of cells containing epithelial cysts and noncystic tubules from each kidney section using ImageJ, as described previously (28 (link)).
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5

Protein Extraction and Western Blot Analysis

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The total proteins were extracted from cells, which were dissolved with RIPA (Radio-Immunoprecipitation Assay) Lysis buffer (Beyotime, Shanghai, China) and 1% PMSF (Phenyl methane sulfonyl fluoride) (Beyotime). Protein samples with a loading buffer were electrophoresed on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS–PAGE), then transferred to a polyvinylidene difluoride (PVDF) membranes (Millipore, Boston, MA, USA). After blocking by 5% skimmed milk and subsequently incubating with primary antibody anti-desmin antibody (D33, ab8470, Abcam, LDN, USA) (1:1000), MyoD (SPM427, Novus, USA) (1:500), YY1 (ab43058, Abcam) (1:1000) and GAPDH (Beyotime) (1:2000) at 4 °C overnight, and the corresponding secondary antibody [horseradish peroxidase-conjugated goat anti-rabbit or goat anti-mouse secondary antibodies (Beyotime) (1:2000)] at room temperature for 1 h. The blots were exposed to ECL reagent (Thermo Scientific, Waltham, MA, USA) and detected by ImageQuant LAS4000 (GE Healthcare, Chicago, IL, USA).
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6

Structural Analysis of Protein Mutations

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Mutations were mapped with structure 4CVH from the RCSB Protein Data Bank (5 ) in YASARA software (10 ) , and the effect of missense mutations was predicted with HOPE (11 ) .
IMMUNOHISTOCHEMISTRY, SDS-PAGE, AND WESTERN BLOTTING Immunohistochemistry, SDS-PAGE, western blotting, and laminin overlay of muscle biopsies and HAP1 or fibroblast glycoproteins enriched with wheat germ agglutinin agarose were performed as described (12, 13 ) . Primary antibodies were desmin (1:100, ab8470, Abcam) and ␤-dystroglycan (1:250, NCL-b-DG, Novacastra). Secondary antibodies were horse radish peroxidaseconjugated polyclonal goat antirabbit or goat antimouse (1:5000, Pierce).
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7

Immunohistochemical Analysis of Kidney Sections

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Deparaffinized kidney sections (5 μm thick) were immunostained with antibodies against desmin (ab8470, Abcam, Cambridge, UK), Ki-67 (#418071, Nichirei Biosciences, Tokyo, Japan), p-mTOR (#293133, Santa Cruz Biotechnology, Santa Cruz, CA, USA), and p-ERK (#4376, Cell Signaling Technology, Danvers, MA, USA) according to the instructions for analyzing under a light microscope (Eclipse 80i microscope, Nikon, Tokyo, Japan). For each section, 30 randomly chosen fields were photographed using a digital color camera (DS-Fi2-U3 color camera, Nikon). Using ImageJ, the stained percentage of the target area was then estimated after selecting a glomerular area with desmin staining(13). The percentage of cells positive for Ki-67, was calculated from the total number of cells containing epithelial cysts and non-cystic tubules from each kidney section using ImageJ, as described previously (27) .
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8

Fibrin Microbead Generation from Rat MSCs

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All chemicals used for the generation of fibrin microbeads were purchased from Sigma-Aldrich (St. Louis, MO) and were used without further purification. MSCs isolated from the rat bone marrows were seeded on tissue culture polystyrene (TCPS) flasks (Corning, NY) and cultured in the Minimum Essential Medium Alpha (a-MEM; Lonza, Basel, Switzerland), L- glutamine (Lonza, Basel, Switzerland), penicillin/streptomycin solution (Pen/Strep, Lonza, Basel, Switzerland) and foetal bovine serum (FBS; Lonza, Basel, Switzerland). Trypsin (Sigma-Aldrich, St. Louis, MO) and ethylenediaminetetraacetic acid (EDTA; Sigma-Aldrich, St. Louis, MO) were used to harvest the expanded MSCs. The antibodies used were as follows: anti-MyoD1 antibody (ab16148 AbCam, Cambridge, MA), anti-Desmin antibody (ab8470 AbCam), anti-myogenin (ab1835 AbCam). Whole blood, used as the source of PRP and PPP, was obtained from adult Wistar rats.
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9

Histological Evaluation of MSC-Mediated Muscle Repair

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FM-R with/without MSCs-transplanted muscle tissues were retrieved at specific time points, fixed in 2.5% GA in phosphate buffer (pH 7.4). Fixed tissue samples were embedded in paraffin and cut into 5-mm sections. After standard preparations, the tissue sections were stained with either haematoxylin and eosin (H&E), or Masson's Trichrome (MTC), then examined under a light microscope (Nikon, Tokyo, Japan). Morphological scoring system of the muscles associated with the stage of repair was implemented on the experimental samples according to Table 1. The regenerative efficiencies of MSC-free FMs, MSCs-containing FMs and the Sham group were compared. The histomorphometric analyses for each experimental group and each time point were performed on nine slides from three different animals for H&E and MTC stainings.
For immunohistochemistry, samples were incubated overnight at 4 C with primary mouse monoclonal antibodies at the respective concentrations: anti-myogenin (1:100; Abcam cat. no. ab1835), anti-Desmin (1:50; Abcam cat. no. ab8470) and anti-MyoD1 (1:100; Abcam cat. no. ab16148). Sections were washed three times with PBS and the secondary antibody was applied for 1 h at room temperature. Sections were washed three times with PBS, and examined under the light microscope (Nikon, Tokyo, Japan).
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