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2 protocols using anti ikaros

1

Histone Modifications and Chromatin Interactions

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Rabbit polyclonal to H1, HMGN1, HMGN2, and H3 were from our laboratory, anti H3K27ac (Abcam#ab4729), anti H3K27me3 (Abcam#ab6002), monoclonal anti H1(Milipore-Sigma #05-457), anti CEBPB (Abcam#ab32358), Anti-Brd3 (Active Motif #61489), Anti-Brd4 (Bethyl Laboratories #A301-985A100), Anti-CEBPB (Abcam #ab32358), Anti-CTCF (EMD Millipore #07-729), Anti-Ets1 (Active Motif #39580), Anti-Ikaros (Active Motif #39355), Anti-Irf8 (Bethyl Laboratories #A304-027A), Anti-Klf4 (Abcam #106629), Anti-Nanog (Active Motif #61419), Anti-Oct4 (Abcam #ab19857), Anti-p300 (Active Motif #61401), Anti-Pax5 (Abcam #183575), Anti-Sox2 (Abcam #97959).
The following recombinant mononucleosomes were purchased from Active Motif: unmodified (#81070); H3K27me3 modified (#81834), H3K27ac modified (#81077).
Wild type and HMGN DKO mouse embryonic fibroblasts, embryonic stem cell lines55 (link) and resting B cells56 (link) were as previously described. Peptides Histone H3 (23–34) peptide, KAARKSAPATGG and Histone H3K27ac (23–34) peptide, KAAR - K(Ac)—SAPATGG were from AnaSpec, Inc.
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2

Immunoblot and Intracellular Antibody Analysis

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The following antibodies were used for immunoblot analysis: anti-Ikaros (mouse mAb clone 4E9; from K. Georgopoulos, Harvard University), anti-TBP (mouse mAb clone 3TF1-3G3; Active Motif) and for cell stimulation or intracellular staining: anti-Igβ (Armenian hamster IgG2 mAb clone HM79; from Hajime Karasuyama, Tokyo), anti-TCRγδ (Armenian hamster IgG2 mAb clone GL-3), anti-pAkt (S473, D9E; Cell Signaling Technology), anti-pErk1/2 (T202/Y204, 20A; BD Bioscience), anti-Aiolos (8B2; eBioscience), anti-Ikaros (2A9, Biolegend; Supplementary Fig. 1f,g) and the rabbit polyclonal anti-Ikaros antibody (5443; Cell Signaling; Supplementary Fig. 8d,e).
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