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Glass beads

Manufactured by Next Advance

Glass beads are small, spherical particles made from glass. They are used in various applications requiring a uniform, consistent, and inert material.

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5 protocols using glass beads

1

Optimized CNS Proteome Extraction

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Mice were anaesthetized with isoflurane and sacrificed by cervical dislocation. CNS tissues (half-brain or spinal cord) were suspended in 0.5 mL of cold PBS and homogenized using a Bullet Blender 24 (Next Advance) using 1 scoop of 0.5 mm diameter glass beads (Next Advance) at a speed setting of 8, for 3 minutes at 4 °C. Thereafter 0.5 mL of cold PBS was added to the homogenates, and mixed by pipetting 8–10 times, and centrifuged at 1400g for 5 minutes at 4 °C to separate tissue debris and glass beads from the proteome. The supernatant (~ 750 μL) was separated and centrifuged at 16,000g for 45 minutes at 4 °C. The supernatant (soluble proteome) was saved and the pellet (membrane proteome) washed with cold PBS (3X), and thereafter re-suspended by pipetting in cold PBS. All protein concentrations were measured using DC Protein Assay Kit (BioRad). All mouse studies were performed following protocols that received approval from The Scripps Research Institute-Institutional Animal Care and Use Committee Office.
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2

Isolation and Characterization of Mouse Brain Membrane Proteome

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All mouse studies were performed following protocols that received approval from the Indian Institute of Science Education and Research Pune Institutional Animal Ethics Committee. The mice were genotyped using an established protocol (5 (link)). The mouse brain membrane proteomes were prepared using a previously described procedure (15 (link)). Briefly, the mice were first anesthetized with isoflurane and euthanized by cervical dislocation, following which the brains of the mice were harvested. A fresh half brain was suspended in 500 μl of cold sterile DPBS and homogenized using a tissue homogenizer (Bullet Blender 24, Next Advance) with one scoop of glass beads (0.5-mm diameter; Next Advance) at a speed setting of 8 for 3 min at 4 °C. To the brain homogenate, an additional 500 μl of cold sterile DPBS was added, mixed by pipetting, and centrifuged at 1000 × g for 5 min at 4 °C to separate the tissue debris. The resulting supernatant (∼700 μl) was separated and centrifuged at 100,000 × g for 45 min at 4 °C. The resulting supernatant was discarded, and the pellet (membrane proteome) was washed with cold sterile DPBS (three times) and resuspended in 1 ml of cold sterile DPBS by pipetting. The protein concentration of the brain membrane proteome was estimated using BCA protein assay kit (Pierce).
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3

Optimized CNS Proteome Extraction

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Mice were anaesthetized with isoflurane and sacrificed by cervical dislocation. CNS tissues (half-brain or spinal cord) were suspended in 0.5 mL of cold PBS and homogenized using a Bullet Blender 24 (Next Advance) using 1 scoop of 0.5 mm diameter glass beads (Next Advance) at a speed setting of 8, for 3 minutes at 4 °C. Thereafter 0.5 mL of cold PBS was added to the homogenates, and mixed by pipetting 8–10 times, and centrifuged at 1400g for 5 minutes at 4 °C to separate tissue debris and glass beads from the proteome. The supernatant (~ 750 μL) was separated and centrifuged at 16,000g for 45 minutes at 4 °C. The supernatant (soluble proteome) was saved and the pellet (membrane proteome) washed with cold PBS (3X), and thereafter re-suspended by pipetting in cold PBS. All protein concentrations were measured using DC Protein Assay Kit (BioRad). All mouse studies were performed following protocols that received approval from The Scripps Research Institute-Institutional Animal Care and Use Committee Office.
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4

Mass Spectrometry Sample Preparation

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LCMS grade acetonitrile (ACN), water, and formic acid (Sigma), glass beads (Next Advance), YPD broth, nanoLC column and Oasis solid phase extraction kit (Waters).
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5

Doxorubicin Quantification in Hippocampi

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Hippocampi were collected and snap frozen at 1- and 4-hours post-Doxo or sham injection (n=3 per group/time). Doxo was extracted in ice-cold lysis buffer (5:3:2 MeOH:MeCN:water), and samples were homogenized with glass beads (NextAdvance) in a Bullet Blender for 5 min at 4°C, then vortexed for 30 min at 4°C and clarified via centrifugation. Supernatants were immediately analyzed on a ThermoFisher Vanquish UHPLC and Thermo Q Exactive Mass Spectrometer using a Kinetex C18 column (Phenomenex) as previously described [23 (link)]. The mass spectrometer was operated in t-SIM with MS1 acquisition at 70,000 resolution, AGC of 3e6, and maximum injection time of 400 ms. Peaks were filtered to include the m/z for the Doxo [M+H]+ ion at (544.18), and spectral matching was performed against Doxo HCl external standard (Cayman Chemical) at 5 μM. Raw files were converted to mzXML, and Doxo peaks were integrated using Maven (Princeton) as described previously described [24 (link)].
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