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16 protocols using penicillin and streptomycin

1

hNPC Proliferation and Differentiation Assay

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hNPCs were chopped to 0.2 mm 2–3 days before plating to reach a defined size of 0.3 mm. Each compound was tested in serial dilution (1:3) with 7 concentrations and a solvent control (SC) plated in five replicate wells per condition in 96-well plates (proliferation U-bottom, Falcon; differentiation flat bottom, Greiner). Each well contained one sphere in 100 μL of the respective medium and FR/solvent(s) (proliferation medium (description in “Cell culture”); differentiation medium consisting of DMEM (Life Technologies), Hams F12 (Life Technologies) 3:1 supplemented with 1% of N2 (Life Technologies) and 1% penicillin and streptomycin (Pan-Biotech)). The 1:3 solution series and plate filling, LDH, CTB, and feeding step were performed automatically by STARlet 8 ML pipette robot system (MICROLAB STAR® M; Hamilton).
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2

Cell Culture and Influenza Virus Propagation

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293T, HeLa, and Huh-7 cells were grown in Dulbecco's modified Eagle's medium (DMEM, PAN Biotech); MDCK, HepG2, and Calu-3 cells were cultivated in minimum essential medium (Gibco); A549 and BEAS-2B cells were incubated in DMEM/F-12 medium (Gibco); and NCI-H292, NCI-H727, and NCI-H1299 cells were incubated in Roswell Park Memorial Institute 1640 medium (Gibco). All media were supplemented with 10% fetal bovine serum (Biochrome) and 100 units/ml penicillin and streptomycin (PAN Biotech). The influenza A viruses A/PR/8/34 (H1N1) and A/Panama/2007/99 (H3N2) were reconstituted from previously described 8-plasmid systems (45 (link), 46 (link)). Both viruses were propagated in the chorio-allantoic cavity of 10-day-old embryonated hen eggs (Valo Biomedia GmbH, Germany) for 48 h at 37 °C, as described previously (47 (link), 48 (link)). Thereafter, the eggs were chilled overnight at 4 °C, and the allantoic fluid was harvested.
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3

Antibodies and Lipids for Cell Biology

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Anti-His-tag (mouse), anti-Rac (mouse), anti-E-cadherin (rabbit), anti-GAPDH (rabbit), anti-histone H3 (rabbit), anti-α-tubulin (rabbit), anti-rabbit IgG (goat), anti-mouse IgG conjugated with Alexa Fluor® 488 (goat), anti-rabbit IgG conjugated with Alexa Fluor® 594 (goat) were purchased from Invitrogen (Oregon, USA); anti-mouse IgG was obtained from Dako (rabbit, California, USA). GDP and a non-hydrolyzable GTP analogue, guanosine 5′-[β,γ-imido]triphosphate (GppNHp), were obtained from Jena Bioscience GmbH (Jena, Germany). TC100 insect cell media, fetal bovine serum, antibiotics (penicillin and streptomycin) and 10% Pluronic F-68 were obtained from PAN-Biotech GmbH (Aidenbach, Germany). Phosphatidylserine (PS), Phosphatidylcholine (PC), phosphatidylethanolamine (PE) and sphingomyelin (SM), phosphatidylinositol 4,5-bisphosphate (PIP2), and Folch I and Folch III brain lipid extracts were purchased from Sigma-Aldrich (Munich, Germany). PIP3 is from Merck (Darmstadt, Germany). All other standard reagents, including detergents (Table S1 in File S1) were obtained from Carl Roth GmbH (Karlsruhe, Germany) or Merck-Millipore (Darmstadt, Germany).
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4

Dose-Dependent Effects of Compounds on Neurospheres

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Neurospheres were chopped to 0.2 mm 3 days before plating to reach a defined size of 0.3 mm. Spheres were plated in five technical replicate wells/condition in 96-well plates (flat bottom, Greiner, # 655,180) with one sphere/well plated in 100 µL of differentiation medium containing 13 concentrations of CHMs: 0.000001, 0.00001, 0.0001, 0.001, 0.0025, 0.005, 0.01, 0.025, 0.05, 0.075, 0.10, 0.50, and 1.0 mg/mL LGT and 0.000001, 0.00001, 0.0001, 0.001, 0.0025, 0.005, 0.01, 0.1, 0.25, 0.50, 0.75, 1.0, and 2.0 mg/mL TM. The differentiation medium composition was DMEM (Thermo Fisher, #31,966,021), Hams F12 (Thermo Fisher, #31,765,027) 2:1 supplemented with 1% of N2 (Thermo Fisher, #17,502–048) and 1% penicillin and streptomycin (Pan-Biotech, #P06-07,100). Neurospheres were exposed for 3 (for migration/adhesion endpoints) or 5 (for differentiation endpoints) days and all experiments were performed under standard culture conditions at 37 °C with 5% CO2. For the latter, on day 3, half of the exposure/solvent medium was exchanged and the supernatant was used to detect cytotoxicity by measuring lactate dehydrogenase (LDH) leakage.
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5

Evaluation of Osteogenic Potential of Cell Line

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A well-established cell line was used for the evaluation of the cytotoxicity and the osteogenic potential in direct contact with the materials. Pre-osteoblastic MC3T3-E1 cells (DSMZ Braunschweig, Germany, ACC-210) from newborn mouse calvaria were used. These cells exhibit an osteoblastic phenotype and have the potential to differentiate into osteoblasts [44 (link)]. The cells were cultured in α-MEM medium supplemented with 10% (v/v) fetal bovine serum (FBS) (PAN-Biotech, Aidenbach, Germany), 100 μg/mL penicillin and streptomycin (PAN-Biotech, Aidenbach, Germany), 2 mM L-glutamine (PAN-Biotech, Aidenbach, Germany), and 2.5 μg/mL amphotericin (Thermo Fisher Scientific, Waltham, MA, USA) in a humidified incubator at 37 °C, 5% CO2 (Heal Force, Shanghai, China). The cell culture medium was replaced twice weekly and confluent cells were detached using trypsin-0.25% ethylenediaminetetraacetic acid (EDTA) (Gibco, Thermo Fisher Scientific, Waltham, MA, USA). MC3T3-E1 cells between passages P14-16 were used for the experiments.
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6

Amino Acid Supplementation for Cell Culture

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Dulbecco’s modified Eagle’s medium (DMEM), phenol-free DMEM, penicillin and streptomycin, trypsin, and fetal bovine serum (FBS) were purchased from Pan Biotech (Aidenbach, Germany). High glucose DMEM without methionine and cysteine were purchased from Sigma Aldrich (Istanbul, Turkey). Cell culture supplements such as normocin were purchased from Invivogen (Toulouse – France) and hypoxanthine (HAT) supplements from LGC Standards (Istanbul, Turkey). Transfection reagent Polyjet was purchased from Signagen (Maryland, USA). D-amino acids D-alanine, D-arginine, D-phenylalanine, D-methionine, and D-tryptophan were purchased from Alfa Aesar (Landau, Germany). D-serine, D-valine, were purchased from Sigma Aldrich (Istanbul, Turkey). D-cysteine was purchased from ChemCruz (Heidelberg, Germany). P-Azido-L-phenylalanine (pAzF) was purchased from Bachem (Bubendorf, Swiss). L-Alanine and all chemicals to prepare imaging media and buffer solutions were purchased from neoFroxx (Einhausen, Germany).
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7

Culturing and Transfecting Cell Lines

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293T (human embryonic kidney; ATCC CRL-3216), Vero E6 (African green monkey kidney; ATCC CRL-1586), LLC-MK2 (rhesus macaque kidney; ATCC CCL-7) and EpoNi/22.1 (Buettikofer’s epauletted fruit bat kidney, [44 (link)], kindly provided by M.A. Müller and C. Drosten) cell lines were obtained from collaborators. The cells were grown in Dulbecco’s modified Eagle’s medium (DMEM; PAN Biotech) supplemented with 10% fetal bovine serum (FBS; PAN Biotech) as well as 1x penicillin and streptomycin from a 100x stock solution (PAN Biotech). The cell lines were cultivated at 37 °C and 5% CO2 in humidified atmosphere. Transfection of 293T cells was achieved by calcium phosphate precipitation.
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8

Culturing Mouse Pre-Osteoblastic Cells

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MC3T3-E1 pre-osteoblastic cells (DSMZ, Braunschweig, Germany, ACC-210) isolated from newborn mouse calvaria have the capacity to differentiate into osteoblasts in vitro [56 (link)], and have been used for the investigation of cell adhesion, viability, proliferation, and differentiation of biomaterials. The pre-osteoblastic cells were cultured in complete medium comprising alpha-MEM cell culture medium (PAN-Biotech, Aidenbach, Germany) supplemented with 10% (v/v) fetal bovine serum (FBS) (PAN-Biotech, Aidenbach, Germany), 100 μg/mL penicillin and streptomycin (PAN-Biotech, Aidenbach, Germany), 2 mM L-glutamine (PAN-Biotech, Aidenbach, Germany), and 2.5 μg/mL amphotericin (Gibco, Thermo Fisher Scientific, Waltham, MA, USA) in a humidified incubator at 37 °C, 5% CO2 (Heal Force, Shanghai, China). The culture medium was replaced twice weekly. The cells were detached using trypsin-0.25% ethylenediaminetetraacetic acid (EDTA) (Gibco, Thermo Fisher Scientific, Waltham, MA, USA). Passages 12–17 of pre-osteoblastic cells were used for the viability and differentiation experiments.
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9

Establishment and Characterization of CMGC Cell Line

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The CMGC cell line CIP established by N. Sasaki was used in this study [36 (link)]. The validated CIP cell lines obtained from N. Sasaki were delivered from an anonymous veterinary pharmacology laboratory. CIPp was derived from primary CMGCs, and CIPm was derived from metastatic regional lymph nodes. CIPp and CIPm cells were cultured in the Roswell Park Memorial Institute-1640 medium (Sigma-Aldrich, St. Louis, MO, USA) containing 10% foetal bovine serum (Sigma-Aldrich, St. Louis, MO, USA) and 1% penicillin and streptomycin (PAN-Biotech, Aidenbach, Germany). The cultured cells were incubated at 37 °C in a humidified atmosphere of 5% CO2, and the medium was replaced every 2–3 days.
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10

Investigating the Effects of SiO2 and Angiotensin-(1-7) Analogs on Lung Epithelial Cells

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MLE-12 cells (mouse lung type II epithelial cell line) were obtained from the American Type Culture Collection (CRL-2110; ATCC, Manassas, VA, USA). MLE-12 cells were grown as monolayer cultures routinely in DMEM/F-12 50/50 medium (10-092-CVR; Mediatech, VA, USA) supplemented with 10% fetal bovine serum (10099141; Gibco, Thermo Fisher Scientific, Madison, WI, USA) and 1% penicillin and streptomycin (P06-07001; Pan Biotech, Aidenbach, Germany) and maintained at 5% CO2 and 37°C.
After serum starvation for 24 h, the cells were cultured with various combinations of the following: SiO2 (50 μg/cm3), 10−7 mol/L Ang-(1–7) (4084113; Bachem),19 (link) 10−5 mol/L A779, 10−4 mol/L DIZE,20 (link) and 10−5 mol/L MLN-4760.21 (link) Cells were harvested for total RNA and protein extraction after treatment for 48 h.
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