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14 protocols using sc 66036

1

Immunohistochemistry Protocol for Proliferation and Oxidative Stress Markers

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Primary monoclonal antibody, mouse anti-proliferating cell nuclear antigen (PCNA) (1:100, M0879, Dako, Glostrup, Denmark) was used as a proliferation marker, incubated overnight at 4 °C with the negative control reagent (V1617; Dako, Glostrup, Denmark). Next, LSAB2 System-HRP visualization reagent for use on rats (K0609; Dako, Glostrup, Denmark) was applied according to the manufacturer’s instructions. Antibodies to oxidative/nitrosative stress markers were anti-8-OHdG (1:300, sc-66036) and anti-nitrotyrosine (1:100, sc-32757), both from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). After overnight incubation at 4 °C, sections were treated with Dako REAL EnVision/HRP, Rabbit/Mouse reagent (K5007, Dako, Agilent Technologies Inc., Santa Clara, CA, USA); 3,3′-diaminobenzidine-tetrahydrochloride (DAB) was used for signal staining and hematoxylin for counterstaining. Immunohistochemistry was done on at least 6 samples from different groups of treated animals.
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2

Immunohistochemical Analysis of Oxidative Stress and Matrix Metalloproteinases

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Five 4-µm cross-sections, mounted on previously silanized slides, were
used to show the expression of 8-OHdG, MMP-2 and MMP-9. The slides were then
deparaffinized, cleared, hydrated and washed in running water. Then, endogenous
peroxidase activity was blocked with 0.3% hydrogen peroxide, protein blocking
was performed with 0.3% skim milk diluted in PBS and the slides were incubated
overnight with anti-8-OHdG (SC66036 Santa Cruz® Biotechnology, CA, USA)
primary antibody, titrated 1:100, and MMP2/72KDa and MMP9/KDa (SC-10436 Santa
Cruz® Biotechnology, CA, USA; SC-6840 Santa Cruz®Biotechnology, CA, USA), titrated 1:150 in PBS-BSA 0.1%. All slides were then
placed in a humid chamber at 4°C overnight. The material was washed with PBS
buffer and incubated with biotinylated secondary antibody. For revelation, the
3-3´diaminobenzidine chromogenic substrate was used at a ratio of 0.06 g per 100
mL of PBS, and 1 mL of 20-volume H2O2 for five minutes at
37°C and counter-stained with Mayer’s hematoxylin for 3 minutes. Finally, the
slides were mounted with cover slips and entellan® for analysis under
light microscopy.
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3

Intracellular ROS and Oxidative DNA Damage in Chondrocytes

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Intracellular ROS production in the chondrocytes were detected with the cell-permeable fluorescent dye dihydroethidium (DHE), and oxidative DNA damage was determined with 8-oxo-dG antibody, the oxidized derivative of deoxyguanosine. The primary chondrocytes were treated with IL-1β (10 ng/mL) with or without 2-deoxy-d-glucose (2-DG; 2 mM), IACS-010759 (2 µM), 1400W (10 µM), and APX-115 (10 µM) for 24 h. The cells were fixed with 4% paraformaldehyde for 10 min, permeabilized with 0.25% Triton X-100, and washed with phosphate-buffered saline (PBS) three times. To assess intracellular ROS production, 5 µM DHE was added for 30 min at 37 °C. The cells were washed with PBS, and photos of the cells were taken with an KI-3000F fluorescence microscope (Korealabtech, Pyeongtaek, Republic of Korea). For the immunofluorescence staining of 8-oxo-dG, the cells were incubated with primary antibody for 8-oxo-dG (sc-66036; Santa Cruz Technology, Beverly, MA, USA) overnight at 4 °C and incubated with a secondary antibody for 2 h and then photographed under the fluorescence microscope. Fluorescence-positive cells were quantified with ImageJ software (version 1.8.0, National Institutes of Health, Bethesda, MD, USA).
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4

Cisplatin-Induced Kidney Injury Pathways

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BUMPT cells were stimulated with or without 40 μM cisplatin for about 24 h. SDS lysis buffer was used for protein extraction from BUMPT cells and kidney cortex tissues. Proteins were quantified by BCA quantification kit (CW0014, CWbiotech, China) and were separated by SDS–PAGE. After transferring to the PVDF membrane, proteins were incubated with primary antibodies overnight at 4 oC and secondary antibodies for about 2 h. The primary antibodies were anti-Bax antibody (2772, CST), anti-caspase-3 (9662, CST), anti-Bcl-2 antibody (ab59348, Abcam), anti-Tim-3 antibody (ab185703, Abcam), anti-HO-1 antibody (52947, Abcam), anti-pIKKα/β (phosphor S176/180) antibody (2697, CST), anti-NF-κB p65 (phosphor S536) antibody (ab86299, Abcam), anti-PARP antibody (BS7047, Bioword), anti-8-OHDG antibody (sc-66036, Santa Cruz), and anti-GAPDH antibody (AC033, Abclonal). The second antibodies were an anti-rabbit IgG antibody (BA1054, Boster) and an anti-mouse IgG antibody (BA1050, Boster). Chemiluminescent signals were analyzed using an ECL detection kit (WBKLS0500; Millipore). The densities of bands were measured with ImageJ software.
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5

Evaluating Hepatocyte Oxidative Stress

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Liver paraffin-embedded sections were stained for 8-hydroxydeoxyguanosine (8-OHdG) to evaluate oxidative stress within hepatocytes. The samples were deparaffinized and incubated with monoclonal mouse 8-OHdG Ab (sc-66036, Santa Cruz Biotechnology, Inc.). The integrated optical intensity (IOD) of 8-OHdG (+) within the nuclei of hepatocytes was evaluated by Image-Pro Plus 6.0 (Media Cybernetics, Inc.).
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6

Quantitative Analysis of NLRP3, SIRT1, and 8-OHdG in Rat Brain Tissue

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The rats were exposed to a cold PBS and 4% paraformaldehyde perfusion after anesthesia. The rat brains were removed, fixated, desiccated, and sliced into 10-μm segments. The segments were permeabilized, blocked, and followed by incubation with the primary antibodies anti-NLRP3 (1:100, #DF7438; Affinity Biosciences, Cincinnati, OH, USA), anti-SIRT1 (1:100, #8469; CST, Boston, MA, USA), anti-8-OHdG (1:100, sc-66036; Santa Cruz Biotechnology, CA, USA), anti-MAP2 (1:50, #4542; CST, Boston, MA, USA), and anti-NeuN (1:100, ab177487; Abcam, Cambridge, MA, USA), overnight at 4 °C. Following triple TBST wash steps, the segments were placed under incubation with the corresponding, fluorescent, secondary antibody. Subsequently, the segments were sealed with DAPI (C1006; Beyotime, Shanghai, China), imaged with a laser scanning confocal microscope (ZEISS 8.0, Oberko, Germany), and quantified by Image J software.
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7

Immunohistochemical Analysis of Proliferation and Oxidative Stress

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Primary mouse monoclonal antibody against proliferating cell nuclear antigen [monoclonal mouse anti-proliferating cell nuclear antigen (PCNA), clone PC 10, M0879 (Dako, Glostrup, Denmark)] was used (1:50) for the detection of proliferating cells. The antibody was incubated overnight at 4°C. The standard negative control reagent (V1617; Dako) was used to inhibit the appearance of endogenous signal. PCNA expression was visualized by using the LSAB2 System-HRP for use on Rat Specimens Kit (K0609; Dako) according to the manufacturer's instructions. Oxidative stress was detected by 8-OHdG (1:500, sc-66036) and nitrotyrosine (1:50, sc-32757), both from Santa Cruz Biotechnology, Inc. (Dallas, TX). The antibodies were incubated overnight at 4°C. Sections were treated with Dako REAL™ EnVision™/HRP, Rabbit/Mouse reagent (K5007; Dako; Agilent Technologies, Inc., Santa Clara, CA); 3,3′-diaminobenzidine-tetrahydrochloride (DAB) was used for signal staining, and hematoxylin was used for counterstaining.
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8

Immunohistochemical Analysis of 8-OHdG in Lung

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For the immunohistochemical assay, 6-mm-thick lung sections were treated sequentially with an antibody against 8-OHdG (sc66036, 1:100, Santa Cruz, TX, USA), incubated at 37 °C for 1 h, kept in the refrigerator at 4 °C overnight, and then rinsed with phosphate-buffered saline (PBS). In addition, the samples were treated with biotinylated goat anti-rabbit secondary antibody solution (ready-to-use) and incubated at 37 °C for 30 min, followed by PBS washes. The samples were treated with newly prepared diaminobenzidine (Boster, Wuhan, China) staining solution for 2 min, followed by washing with PBS. The samples were restained with haematoxylin (Keygen, Nanjing, China) for 1 min, dehydrated, permeabilized, and mounted with neutral balata. Semiquantitative analysis of the immunohistochemistry staining was carried out with ImageJ software (NIH, Bethesda, MD, USA).
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9

Immunohistochemical Analysis of Prostate Tissues

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Immunohistochemistry of the human prostate tissue microarray and mouse prostate tissues were conducted using paraffin-embedded sections. After deparaffinizing and rehydrating of the tissue section, antigen retrieval was performed for 20 min in a rice steamer in Tris-EDTA Buffer, pH 8.0 (Sigma, St. Louis, MO). The anti-Ki-67 antibody (RM-9106; Thermo Fisher Scientific, Waltham, MA) was used at 1:40 dilution. Sections were incubated with the primary antibody for 2 hr at room temperature (RT) and developed using the avidin-biotin peroxidase complex procedure (Vector Laboratories, Burlingame, CA). The detection of the antibody was performed using HRP visualization with Stable DAB Plus (Diagnostic Biosystems, Pleasanton, CA) for 2 min at RT.
For detection of 8-hydroxy deoxyguanosine (8-OH dG), samples were pretreated with RNase (100 μg/ ml) for 60 min at 37°C, then with proteinase K (10 μg/ ml) for 30 min at 37°C and finally with 4N HCL at RT for 7 min. Slides were then incubated with the primary antibody (Santa Cruz, SC-66036) at 1:500 dilution overnight at 4°C followed by blue AP visualization using Alkaline Phosphatase Substrate Kit III (Vector Laboratories).
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10

Quantifying Oxidative DNA Damage in HaCaT Cells

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To assess the levels of oxidative DNA damage, HaCaT cells were grown on glass coverslips. After washing with PBS three times, the cells were fixed with 4% paraformaldehyde (pH 7.4). The cells were then treated with 0.3% Triton-X100 for 20 min to increase membrane permeability. Subsequently, the cells were blocked with 1% BSA in PBS (0.1% Triton X-100) at 37 °C for 2 h. Next, the cells were incubated with 8-OHdG antibody (1:100; sc-66036; Santa Cruz, CA, USA) at 4 °C overnight. After rinsing with PBS three times, cells were incubated with Alexa Fluor-594-inked secondary antibody for 2 h at room temperature. DAPI was used to counterstain cell nuclei. Fluorescence images were acquired under a fluorescence microscope and analyzed with ImageJ software.
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