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7 protocols using cfi apo tirf 100 1.49 n a oil objective

1

TIRF Imaging of Microtubule Dynamics

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HeLa cells were transfected with mRFP-tubulin and GFP, GFP-KIF21B (full length) or GFP-KIF21B (1-620), respectively. Total Internal Reflection Fluorescence (TIRF) microscopy was performed on a Nikon Spinning disc microscope equipped with a Nikon CFI Apo TIRF 100× 1.49 N.A. oil objective and the 561nm laser to visualize MT at the vicinity of the cell cortex. Images were taken every 1s for 300 frames. To assess the stability of MT, the average lifetime of single MTs before catastrophe was quantified. Quantification was done manually using Volocity (Improvision, Waltham, MA).
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2

TIRF Microscopy of Cellular Proximities

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For TIRF microscopy, cortical cells were first transfected with tagBFP2-CAAX (plasmid #116856; Addgene, Watertown, MA, USA) [89 (link)] and pMH4-SYN-EGFP-ER (plasmid #22285; Addgene) [90 (link)]. The plasmid tagBFP2-CAAX encodes a fusion protein comprising blue fluorescence protein (BFP) and the CAAX motif-containing amino acids 172–184 of the proto-oncogene H-Ras, and the plasmid pMH4-SYN-EGFP-ER encodes a fusion protein comprising enhanced green fluorescence protein (EGFP), the ER-targeting sequence of calreticulin, and the ER retention sequence KDEL.
Then, cells were fixed in 4% formaldehyde and subjected to proximity ligation assay. Finally, cells were kept in HEPES buffer, and images were taken with a Nikon Eclipse Ti spinning disk microscope equipped with a Nikon CFI Apo TIRF 100× 1.49 N.A. oil objective using 405 nm, 488 nm, and 561 nm lasers. Images were recorded using Visitron Systems software (Visitron Systems, Puchheim, Germany), and numbers of red dots were quantified using ImageJ.
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3

TIRF Microscopy for Live-Cell Imaging

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TIRFM was performed on an inverted research microscope Nikon Eclipse Ti-E (Nikon) with the perfect focus system (PFS) (Nikon), equipped with the Nikon CFI Apo TIRF 100× 1.49 N.A. oil objective (Nikon), Photometrics Evolve 512 EMCCD (Roper Scientific) and controlled with the MetaMorph 7.7 software (Molecular Devices). Images were projected onto the chip of Evolve 512 camera with intermediate lens 2.5X (Nikon C mount adapter 2.5X). To keep in vitro samples at 30°C, we used stage top incubator INUBG2E-ZILCS (Tokai Hit).
For excitation we used 491nm 100mW Stradus (Vortran), 561nm 100mW Jive (Cobolt) and 642 nm 110 mW Stradus (Vortran). We used ET-GFP 49002 filter set (Chroma) for imaging of proteins tagged with GFP, ET-mCherry 49008 filter set (Chroma) for imaging X-Rhodamine labelled tubulin or mCherry-EB3 and ET-405/488/561/647 for imaging SNAP-Alexa647. For simultaneous imaging of green and red fluorescence, we used the triple-band TIRF polychroic ZT405/488/561rpc (Chroma) and the triple-band laser emission filter ZET405/488/561m (Chroma), mounted in the metal cube (Chroma, 91032) together with Optosplit III beamsplitter (Cairn Research Ltd, UK) equipped with a double emission filter cube configured with ET525/50m, ET630/75m and T585LPXR (Chroma). We used sequential acquisition for triple colour imaging experiments.
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4

Visualizing Dynamin Dynamics in PC12 Cells

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Transfected PC12 cells were bathed in Buffer A (145 mM NaCl, 5 mM KCl, 1.2 mM Na2HPO4, 10 mM D-glucose and 20 mM HEPES, pH 7.4). The cells were then visualized using an inverted Roper Scientific TIRF microscope equipped with a perfect focus system and an iLas2 double-laser illuminator (Roper Scientific). The microscope was fitted with a Nikon CFI Apo TIRF × 100 (1.49 NA) oil objective (Nikon Instruments) and an Evolve 512 delta EMCCD camera (Photometrics). Metamorph software was used for movie acquisition (Metamorph 7.7.8, Molecular Devices) at 50 Hz with 16,000 frames acquired for each cell kept at 37 °C. A 491 nm laser was used to photoactivate the cells expressing Dyn1aa-GFP, Dyn1ab-GFP, and Dyn1bb-GFP in both control (before) and 2 mM Ba2+ (during) stimulation conditions. TIRF angle was calibrated each imaging session and TIRF critical angle was ~70°. PC12 cells were selected based on cell morphology (proper attachment to the cover-glass and presence of filipodia).
The LFA refers to areas with comparatively less Dyn1-GFP fluorescence observed throughout the acquisition period, compared to that of HFA which exhibited high intensity Dyn1-GFP. Since the distribution of HFAs and LFAs varied dynamically, ROIs of equal size were meticulously chosen for each movie to ensure they were within either HFAs or LFAs throughout the duration of the acquisition.
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5

TIRF Microscopy for Live-Cell Imaging

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TIRFM was performed on an inverted research microscope Nikon Eclipse Ti-E (Nikon) with the perfect focus system (PFS) (Nikon), equipped with the Nikon CFI Apo TIRF 100× 1.49 N.A. oil objective (Nikon), Photometrics Evolve 512 EMCCD (Roper Scientific) and controlled with the MetaMorph 7.7 software (Molecular Devices). Images were projected onto the chip of Evolve 512 camera with intermediate lens 2.5X (Nikon C mount adapter 2.5X). To keep in vitro samples at 30°C, we used stage top incubator INUBG2E-ZILCS (Tokai Hit).
For excitation we used 491nm 100mW Stradus (Vortran), 561nm 100mW Jive (Cobolt) and 642 nm 110 mW Stradus (Vortran). We used ET-GFP 49002 filter set (Chroma) for imaging of proteins tagged with GFP, ET-mCherry 49008 filter set (Chroma) for imaging X-Rhodamine labelled tubulin or mCherry-EB3 and ET-405/488/561/647 for imaging SNAP-Alexa647. For simultaneous imaging of green and red fluorescence, we used the triple-band TIRF polychroic ZT405/488/561rpc (Chroma) and the triple-band laser emission filter ZET405/488/561m (Chroma), mounted in the metal cube (Chroma, 91032) together with Optosplit III beamsplitter (Cairn Research Ltd, UK) equipped with a double emission filter cube configured with ET525/50m, ET630/75m and T585LPXR (Chroma). We used sequential acquisition for triple colour imaging experiments.
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6

Multimodal Microscopy Imaging of Pancreatic Cells

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Fixed and stained INS-1E cells, EndoC-βH1, dispersed human pancreatic islets and live GFP–ELKS-expressing pancreatic islets were imaged using TIRFM performed on an inverted research microscope Nikon Eclipse Ti-E (Nikon) with a perfect focus system (PFS) (Nikon), equipped with a Nikon CFI Apo TIRF 100×1.49 NA oil objective (Nikon), Evolve 512 EMCCD (Photometrics) or Prime BSI camera (Photometrics) or CoolSNAP HQ2 CCD camera (Roper Scientific) and controlled with the MetaMorph 7.7.11.0 software (Molecular Devices). Images were projected onto the chip of an Evolve 512 camera with an intermediate lens 2.5× (Nikon C mount adapter 2.5×) or onto a CoolSNAP HQ2 or a Prime BSI chip without the lens. In all cases the final magnification was equal to 0.065 μm/pixel. To keep cells at 37°C a stage top incubator INUBG2E-ZILCS (Tokai Hit) was used. For excitation, 491 nm 100 mW Stradus (Vortran), 561 nm 100 mW Jive (Cobolt) and 642 nm 110 mW Stradus (Vortran) lasers were used. The microscope was equipped with an ET-GFP 49002 filter set (Chroma) for imaging of proteins tagged with GFP, an ET-mCherry 49008 (Chroma) and an ET-405/488/561/647 filter set. For presentation, images were adjusted for brightness using ImageJ 1.50b.
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7

Multicolor TIRF Microscopy for Microtubule Assays

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TIRF microscopy was performed on Nikon Eclipse Ti2-E (Nikon) with the perfect focus with the Nikon CFI Apo TIRF 100× 1.49 N.A. oil objective (Nikon), Prime 95B camera (Photometrics), SOLE laser engine (four lasers: 405, 488, 561, and 638 nm; Omicron) and controlled by NIS-Elements software (Nikon). Images were magnified with a 1.5× intermediate lens on Ti2-E before being projected onto the camera. The resulting pixel size is 73.3 nm/pixel. Stage-top incubator INUBG2E-ZILCS (Tokai Hit) was used to keep in vitro samples at 30°C. All adjustable imaging parameters (TIRF angle, laser intensity, and exposure time) were kept the same within experiments.
For branching MT nucleation assays with native complexes in vitro, images were collected for 25 min with an interval of 4 s. For branching MT nucleation assays with recombinant complexes in vitro, the images were collected for 15 min with an interval of 4 s. For other in vitro MT assays, the images were collected for 10 min with an interval of 2 s.
Optosplit III beamsplitter (Cairn Research) was used for simultaneous imaging of red and green fluorescence. The sequential acquisition was used for three- or four-color imaging experiments.
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