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E z n a hp total rna kit

Manufactured by Omega Bio-Tek
Sourced in United States

The E.Z.N.A. HP Total RNA Kit is a nucleic acid extraction and purification system designed to efficiently isolate high-quality total RNA from a variety of sample types, including cultured cells, tissues, and other biological sources.

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44 protocols using e z n a hp total rna kit

1

Smad Signaling Regulation in Osteosarcoma

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To examine the effects of BMP-2 and Spp24 on Smad signaling in osteosarcoma cells at the gene level, 143B and MG63 cells were seeded and grouped as Control, BMP-2 (100 ng/mL), Spp24 (20 µg/mL), BMP-2 + Spp24 (100 ng/mL, 20 µg/mL) in 6-well plates at a density of 1 × 10 5 cells/well and cultured for 24 hours. Total RNA was isolated by E.Z.N.A.® HP Total RNA Kit (Omega Bio-Tek, Norcross, GA, USA). 1 µg RNA was subjected to reverse transcription using the Prime-Script RT reagent kit (Takara, Shiga, Japan). Real-time PCR was performed with a 7300 Real-Time PCR system with SYBR® Premix Ex Taq™ (Takara, Shiga, Japan). The primer sequences used are listed in Table 1. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was evaluated in separate tubes for each RT reaction as a standard. Relative gene expression was analyzed by the ΔΔCT method (10) .
Table 1 Sense and anti-sense primers for Real-time PCR.
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2

Quantitative RT-PCR Analysis of SET Gene

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Total RNA isolated from cells was used E.Z.N.A.® HP Total RNA Kit (Omega Bio-tek, Doraville, GA, USA). The reverse transcription was performed with the PrimeScript® RT reagent Kit (TakaRa, Shiga, Japan). After mixing the resulting Complementary DNA template with SET, or GAPDH primers, respectively and TaKaRa SYBR® Premix Ex Taq™, Quantitative Real-Time PCR reaction was performed on a ABI 7500 Fast Real-Time PCR System (Applied Biosystems, Foster City, CA). Gene-specific primer pairs used in this study are:
SET forward, 5′-AAATATAACAAACTCCGCCAACC-3′,
SET reverse, 5′-CAGTGCCTCTTCATCTTCCTC-3′;
β-actin forward, 5′- GGCCAGGTCATCACCATTG-3′,
β-actin reverse, 5′- GGATGTCCACGTCACACTTCA-3′.
β-actin was used as the reference gene. The relative levels of gene expression were represented as ΔCt-Ct gene-Ct reference, and the fold change of gene expression was calculated by the 2−ΔΔCt Method. Experiments were repeated in triplicate.
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3

Quantitative Analysis of mRNA and miRNA

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For mRNA detection, total RNAs were extracted using the E.Z.N.A.® HP Total RNA Kit (Omega Bio-tek, Doraville, GA, USA), followed by reverse-transcription using the PrimeScript® RT reagent Kit (TakaRa, Shiga, Japan), and quantitative PCR using the SYBR Green qRT-PCR according to the manufacturer’s instructions (Applied Biosystems). The primer pairs used are shown in Supplementary Table 4.
For miRNA detection, the reverse transcribed cDNA was synthesized with the All-in-One™ miRNA First-Strand cDNA Synthesis Kit (GeneCopoeia, Rockville, MD, USA). miR-29b-2 and miR-338 expression was determined with the All-in-One™ miRNA qRT-PCR Detection Kit (GeneCopoeia, Rockville, MD, USA).
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4

Quantitative Real-Time PCR for Gene Expression

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Total RNA was extracted using the E.Z.N.A. HP Total RNA kit (Omega Bio-tek, United States). The cDNA synthesis was carried out using 0.5 μg of RNA with the Prime Script RT master mix (Perfect Real Time; TaKaRa, Japan). Quantitative real-time PCR analysis was conducted in triplicate on LightCycler 480 (Roche, Mannheim, Germany) using SYBR Premix Ex Taq (TaKaRa, Japan) and the datas were normalized based on the expression of GAPDH RNA. The results were calculated utilizing the ΔΔCT methods. The primers for selected genes were as follows:
h-iNOS: 5′-AGCTGAACTTGAGCGAGGAG-3′, 5′-GGAAAAGACTGCACCGAAGA-3′;
h-TNF-α: 5′-GTGCTTGTTCCTCAGCCTCTT-3′, 5′-ATGGGCTACAGGCTTGTCACT-3′;
h-IL-10: 5′-ACCTGCCTAACATGCTTCGAG-3′, 5′-CTGGGTCTTGGTTCTCAGCTT-3′;
h-sPLA2-IIA: 5′-TGACGACAGGAAAGGAAGCC-3′, 5′-CTGCTCCCCGAGTTGCTAAA-3′;
h-GAPDH: 5′-GCACCGTCAAGGCTGAGAAC-3′, 5′-TGGTGAAGACGCCAGTGGA-3′;
m-IL-6: 5′-CCAAGCCTTATCGGAAATGA-3′, 5′-TTTTCACAGGGGAGAAATCG-3′;
m-TNF-α: 5′-CGGTGCCTATGTCTCAGCCT-3′, 5′-GAGGGTCTGGGCCATAGAAC-3′;
m-sPLA2-IIA: 5′-CTGTTGCTACAAGAGCCTGG-3′, 5′-GCCGTTTCTGACAGGAGTTC-3′;
m-GAPDH: 5′-TGTGTCCGTCGTGGATCTGA-3′, 5′- TTGCTGTTGAAGTCGCAGGAG-3′.
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5

Investigating TGF-β Signaling Pathways

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Recombinant human TGF‐β protein was obtained from PeproTech (Rocky Hill, NJ, USA). Primary antibodies against GSK‐3β (27C10), GSK‐3β (Ser9), AKT (C67E7), p‐AKT (Ser473) were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody against SP1(G447) was obtained from Bioworld (Bioworld Technology, Minneapolis, MN, USA). Protein A/G sepharose and primary antibodies against ubiquitin (SC‐166553) and β‐actin (SC‐130300) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Phycoerythrin (PE)‐labelled antibody against ULBP1 and ULBP2 were obtained from R&D (San Diego, CA, USA). Horseradish peroxidase (HRP)‐conjugated secondary antibody, Alexa Fluor 488‐conjugated secondary antibody, 4′, 6‐diamidino‐2‐phenylindole (DAPI) and lipofectamine 2000 were purchased from Invitrogen (Carlsbad, CA, USA). Proteasome inhibitor MG132 was obtained from Sigma‐Aldrich (St Louis, MO, USA). PrimeScript RT reagent Kit and SYBR Premix Ex TaqTM were products of TaKaRa. E.Z.N.A HP Total RNA Kit was purchased from Omega Bio‐Tek (Doraville, GE, USA). Smart pool siRNA against human SP1 (siSP1), GSK‐3β (si‐GSK‐3β) and control (siNC) were purchased from RiboBio (Guangzhou, China). ERK inhibitor PD98059, p38 MAPK inhibitor SB203580, PI3K inhibitor LY294002 and TGF‐β type I receptor inhibitor SB431542 were obtained from Sigma‐Aldrich.
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6

Quantifying miRNA-146b Expression in Cells

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Total RNA was extracted using E.Z.N.A. HP Total RNA kit (Omega Bio-Tek, Norcross, USA), and total RNA concentration was determined in a NanoDrop1000 spectrophotometer (Thermo Fisher Scientific, Wilmington, USA). ReverTra Ace reverse transcriptase (Toyobo, Osaka, Japan) and miRNA-specific were used to synthesize cDNA. The stem-loop RT-qPCR method was performed, stem-loop RT primers for miR-146b were designed [12 (link)], and U6 snRNA was used as an internal control [16 (link)]. RT-qPCR was performed using SYBR Green Real-time PCR Master Mix (Toyobo, Osaka, Japan) and ABI StepOne Plus real-time PCR system (Applied Biosystems, Foster City, USA). All reactions were carried out in triplicate. Relative quantification was calculated using 2-ΔΔCt.
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7

Quantification of APJ mRNA Expression

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Total RNA was extracted from cell pellets using E.Z.N.A.® HP Total RNA kit (Omega Bio-Tek, Norcross, GA), and reverse-transcribed to cDNA using Maxima cDNA synthesis kit (Thermo Fisher) from 0.5-1 ug of mRNA. qRT–PCR assays were performed using ssoFast Evagreen supermix (BioRad) in CFX96TM Real-Time PCR Detection Systems (BioRad, Hercules, CA). The primers used were: APJ, forward: 5′-TGGTGCTCTGGACCGTGTTT-3′; reverse: 5′-TGAGGTAGCTGCTGAGCTTG-3′; GAPDH, forward: 5′–GACCCCTTCATTGACCTCAAC–3′; reverse: 5′–CTTCTCCATGGTGGTGAAGA–3’. The thermal reaction program was: 30 sec at 95°C, 40 cycles of 5 sec at 95°C, and 5 sec at 55°C. APJ mRNA level relative to GAPDH mRNA was calculated using the ΔΔCt method [50 (link)].
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8

Quantitative Analysis of Na+,K+-ATPase Subunits

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Total RNA was isolated using RNeasy Plus Mini Kit (Qiagen) or E.Z.N.A. HP Total RNA Kit (Omega Bio-tek) and reverse transcribed to cDNA with High-Capacity cDNA Reverse Transcription Kit (Thermo Fisher Scientific). Quantitative real-time polymerase chain reaction (qPCR) was performed on 7500 Real-Time PCR System (Applied Biosystems, Thermo Fisher Scientific) using TaqMan Universal MasterMix and TaqMan gene expression assays for human α1-subunit of Na+,K+-ATPase (No. Hs00167556_m1) and human α3-subunit of Na+,K+-ATPase (No. Hs00958036_m1). Expression of target gene was normalized to expression of cyclophilin (PPIA, No. Hs99999904_m1), which was used as an endogenous control. Efficiency of PCR was estimated with LinRegPCR software (2018.0) (Ramakers et al. 2003 (link); Ruijter et al. 2009 (link); Tuomi et al. 2010 (link)).
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9

MTT-based Cytotoxicity Assay Protocol

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We purchased 3-(4,5-dimethylthiazol2yl)-2,5-diphenyltetrazo-lium bromide (MTT) from Sigma–Aldrich (St. Louis, MO, USA) and obtained PrimeScript RT reagent Kit and SYBR Premix Ex Taq TM from TaKaRa. The E.Z.N.A.® HP Total RNA Kit was a product of Omega Bio-Tek (Doraville, USA) (23 (link)). ADR and CDDP were procured from Zhejiang HISUN Pharmaceuticals Co. (Zhejiang, China) (23 (link)).
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10

Investigating STAT3 Signaling Modulation

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TSA, SAHA and actinomycinD (Act-D) were obtained from Sigma-Aldrich (St Louis, MO). Primary antibodies against p-STAT3, STAT3, Foxo3a were obtained from Cell Signaling Technology (MA, USA). Primary antibodies against P-gp, PXR, CAR, β-catenin, α-tubulin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Horseradish peroxidase (HRP)-conjugated secondary antibody, Alexa Fluor 594 conjugated secondary antibody, DAPI and lipofectamine 2000 were purchased from Invitrogen (Carlsbad, CA, USA). PrimeScript® RT reagent Kit and SYBR® Premix Ex TaqTM were products of TaKaRa. E.Z.N.A® HP Total RNA Kit was bought from Omega Bio-Tek (Doraville, USA). Smartpool siRNA against human STAT3 was obtained from RIBOBIO.
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