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13 protocols using anti col1a1

1

Molecular Pathways of TGF-β1-Induced Fibrosis

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Human TGFβ1 (Solarbio, No. P00121) was suspended as recommended by the manufacturer, at 10 μg/mL stock concentration. Aliquots were kept frozen at −20°C until used. TRPC3 specific inhibitor Pyr3 was purchased from Sigma-Aldrich (St. Louis, MO).
Western blot assays were conducted as previously described [19 (link), 20 (link)]. The primary antibodies included anti-TRPC3 from Alomone Labs (Jerusalem, Israel); anti-TGFβ1 and anti-αSMA from Abcam (Cambridge, UK); anti-fibronectin, anti-NOX4, anti-phosphorylated Smad2/3 (pSmad2/3), anti-Smad2/3, and anti-GAPDH from Santa Cruz Biotechnology (Dallas, TX); anti-Col1a1 from Cell Signaling Technology; and antiphosphorylated pyruvate dehydrogenase E1a subunit (PDHE1a) (p-PDHE1α) from Merck-Millipore (Darmstadt, Germany).
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2

Immunocytochemical Profiling of Keratocytes

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Keratocytes, seeded onto glass coverslips and treated as previously described for 72 h, were fixed with 3.7% buffered paraformaldehyde, permeabilized with 0.1% Triton X-100 in PBS and washed with PBS. Slides were then blocked with 1% bovine serum albumin in PBS for 1 h at room temperature, and finally incubated overnight at 4 °C with the following primary antibodies: anti-CD34 (1:50 dilution; catalog no. ab81289; Abcam), anti-α-SMA (1:100 dilution; catalog no. ab7817; Abcam), anti-COL1A1 (1:300 dilution; catalog no. #39952; Cell Signaling Technology), or anti-podoplanin (1:200 dilution; catalog no. ab10288; Abcam). The day after, slides were incubated for 45 min at room temperature in the dark with Alexa Fluor-488-conjugated or Rhodamine Red-X-conjugated secondary antibodies (1:200 dilution; Invitrogen). Irrelevant isotype-matched and concentration-matched mouse and rabbit IgG (Sigma-Aldrich) were used as negative controls. Nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI). Immunostained cells were examined with a Leica DM4000 B microscope (Leica Microsystems) and fluorescence images were captured with a Leica DFC310 FX 1.4-megapixel digital color camera equipped with the Leica software application suite LAS V3.8 (Leica Microsystems). The assay was performed in duplicate for each of the five cell lines.
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3

Protein Expression Analysis in Kidney Tissue

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Proteins from kidney tissues and cultured cells were extracted with RIPA lysis buffer (Beyotime). Protease and phosphatase inhibitor cocktails were added for the extraction of phosphorylated proteins. The total protein concentration was measured using a BCA protein assay kit (Beyotime). Proteins (40–80 μg) were separated using SDS-PAGE (10%) and transferred to a PVDF membrane. The membranes were blocked with 5% BSA for 1.5 h and incubated with primary antibodies overnight at 4°C, followed by secondary antibodies (goat anti-rabbit, 1:3000; anti-mouse, 1:5000; Servicebio, Wuhan, China) for 1.5 h. The following primary antibodies were used: anti-α-SMA (1:3000, Proteintech, Wuhan, China), anti-Col1a1 (1:1000, Cell Signaling Technology), anti-collagen type III alpha 1 chain (anti-Col3a1, 1:1000, Abclonal), anti-Cpt1a (1:1000, Abclonal), anti-Acox1 (1:1000, Abclonal), anti-phosphorylation-AMP-activated protein kinase (anti-p-AMPK, 1:1000, Abclonal), and anti-glyceraldehyde-phosphate dehydrogenase (anti-GAPDH, 1:50000, Abclonal). Images were visualized using a Gene Gnome XRQ system (Syngene, Cambridge, UK).
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4

Quantitative Analysis of Extracellular Matrix Proteins

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The lysates of HFF1 and NCTC-2544 cells (3 × 105 cells/mL) were prepared using radioimmunoprecipitation assay (RIPA) buffer containing phosphatase and protease inhibitor cocktail (Sigma-Aldrich, St. Louis, MO, USA). The Bradford method was applied for the quantification of the protein content. Western blot analysis was carried out according to our previously described methods [22 (link)] using the following primary antibodies: anti-COL1A1 (Cat#91144, 1:1000 dilution), anti-MMP9 (Cat#3852, 1:1000 dilution), anti-MMP1(Cat#54376, 1:1000 dilution) (Cell Signaling Technology, Denvers, MA, USA), anti-ELN (SAB1405754 from Sigma-Aldrich, 1:1000 dilution), and anti-GAPDH (Millipore, Darmstadt, Germany, dilution 1:5000). The secondary goat antirabbit labeled with IRDye 680 (1:15,000) and goat antimouse labeled with IRDye 800 (1: 20,000) were used to detect primary antibodies. The Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, NE, USA) was used to scan the blot, and quantitative densitometric analysis was performed by using ImageJ (http://imagej.nih.gov/ij/, accessed on 6 September 2021). The results are expressed as arbitrary densitometric units (A.D.U.) and were normalized with respect to GAPDH levels.
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5

Western Blot Analysis of Cardiac Proteins

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In brief, heart tissues were homogenized in a RIPA lysis buffer containing protease and phosphatase inhibitors (Beyotime Biotechnology, Shanghai, China). The protein samples were extracted by ultracentrifugation at 4°C. And the protein concentrations were detected by using a BCA Protein Assay Kit. Equal amounts (40 μg) of denatured protein samples were separated by appropriate sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to the polyvinylidene fluoride (PVDF) membranes (Millipore, United States). To prevent nonspecific protein binding sites from binding to antibodies, the membranes were cultured in 5% nonfat milk. The membranes were then incubated with Rabbit anti-p-ERK1/2 (1 : 1000, Cell Signaling Technology), rabbit anti-ERK1/2 (1 : 1000, Cell Signaling Technology), rabbit anti-Beclin 1 (1 : 1000, Cell Signaling Technology), rabbit anti-GAPDH (1 : 1000, Cell Signaling Technology), rabbit anti-LC3B (1 : 1000, Abcam), anti-collagen III (1 : 1000, Abcam), and anti-Col1A1 (1 : 1000, Cell Signaling Technology), respectively, overnight at 4°C. Subsequently, the membranes were incubated with the corresponding secondary antibody at room temperature for 2 h. The membranes of protein samples were observed with an enhanced chemiluminescence (Pierce Biotechnology, Waltham, MA, USA) and visualized by a gel image analysis system (Bio-Rad).
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6

Western Blot Analysis of Mouse Pancreas

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For Western blotting analysis, proteins were prepared from the mouse pancreas using standard methods. Protein concentrations were determined using the BCA method (Boster Biological Technology) and adjusted to 4 ug/ul. Samples were boiled at 95°C for 4 min before loading and then subjected to SDS-polyacrylamide gel electrophoresis (40 ug/sample) and blotted to PVDF membranes. The membranes were probed with the following antibodies: anti-COL1A1 (Cell Signaling Technology; 1:1000), anti-COX-2 (Santa Cruz; 1:500), and anti-β-actin (Boster Biological Technology; 1:2000). A low–molecular weight protein marker was used to determine the size of the detected bands in the Western blot. Detection and image capturing were performed using an enhanced chemiluminescence illuminating system.
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7

Histomorphometric Analysis of Collagen I

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HE staining and Masson’s trichrome were used to observe morphological changes. After dehydration, decalcification and paraffin embedding, the samples were stained using Hematoxylin-Eosin Staining Kit (Solarbio, China) and Masson’s Trichrome Stain Kit (Solarbio, China). Samples were also detected by histomorphometric analysis. The specimens were permeabilized in 0.1% Triton X-100 and blocked with 5% BSA. The specimens were then incubated with anti-COL1A1 (1:200; Cell Signaling Technology, America) overnight at 4 °C.
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8

Western Blot Analysis of Kidney Injury

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The insulted left kidney tissues were lysed with RIPA buffer (P0013C, Beyotime Biotechnology, Shanghai, China) supplemented with 1% phenylmethylsulfonyl fluoride (P0100, Solarbio, China). BCA protein assay kit (P0010, Beyotime Biotechnology, Shanghai, China) was used to detect protein concentration. The protein samples were separated in 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene difluoride (PVDF) membranes (IPFL00010, Millipore, Bedford, MA, USA). After being blocked in 5% nonfat milk at room temperature for 1.5 h, membranes were incubated with primary antibodies: anti-fibronectin (ab268020, Abcam, Cambridge, UK), anti-αSMA (#19245, Cell Signaling Technology, Danvers, MA, USA), and anti-COL1A1 (#91144, Cell Signaling Technology, Danvers, MA, USA) at 4 °C overnight. The expression levels of target proteins were normalized to that of β-actin (#8457, Cell Signaling Technology, Danvers, MA, USA). Afterward, the membranes were washed and incubated with horseradish peroxidase (HRP)-conjugated anti-rabbit/mouse IgG (L3012, SAB, Nanjing, China) at room temperature for 1.5 h. Enhanced chemiluminescence (ECL, 36208ES60, Yeasen, Shanghai, China) was used to visualize the blots.
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9

Multimodal Tissue Imaging Protocol

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Sections were permeabilized and blocked as described previously 15 . Anti-col1a1 (AB_2904565, Cell Signaling Technology), anti-laminin (AB_10001146, Novus), anti-CD45R/B220 (AB_2896201, eBioscience) for B cells, and dapi or NucSpot Live 488 (Biotium) were used for nuclear staining. Stained samples were mounted in SlowFade Glass (Invitrogen). Micrographs were acquired on a Leica Thunder TIRF instrument in epifluorescence (Leica DMI8), using 20x objective (Leica HC PL APO 20x/0.80 DRY). Laminin fluorescence was corrected for flatness of field using a dyed slide reference and stitched using LAS-X (LAS X 3.7.5.24914).
For sequential staining of sections, initial immunostaining and imaging was performed as described, the samples decoverslipped, and then stained for Masson's trichrome
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10

Immunohistochemical Analysis of Oxidative and Inflammatory Markers

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Formalin, hematoxylin, and eosin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-Col1A1, p-p65, p65, COX-2, MMP-2, MMP-3, TNF-α, and peroxidase-conjugated secondary anti-rabbit antibodies were obtained from Cell Signaling Technology (Boston, MA, USA). Anti-catalase, GPx, SOD-2, IL-1β, Il-17, Il-23, MMP-9, and peroxidase-conjugated secondary anti-mouse antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-8-OHdG antibody was procured from Thermo Scientific (Waltham, MA, USA). All other chemicals used in this study were of analytic grade.
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