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3 protocols using anti p300

1

Antibody-based Protein Analysis in Cancer

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Antibodies being used in this study for Western blots include: anti-GREB1 (#ab72999; Abcam), anti-EZH2 (#612666; BD Biosciences), anti-ERα (#sc-543; Santa Cruz Biotechnology), anti-p300 (#A300-358A; Bethyl Laboratories), anti-CBP (#NB100-382; Novus Biologicals), anti-NCoR (#ab24552; Abcam), anti-HA (#901501; Biolegend), anti-H3K27me3 (#9733; Cell Signaling Technology), anti-GAPDH (#sc-365062; Santa Cruz Biotechnology), and anti-H3 (#ab1791; Abcam). Antibodies for ChIP assays include: anti-ERα (#sc-543; Santa Cruz Biotechnology and #MS-315; Thermo Scientific), anti-EZH2 (#39933; Active Motif), anti-H3K27me3 (#9733; Cell Signaling Technology), anti-p300 (#sc-48343X; Santa Cruz Biotechnology), anti-CBP (#ab2832; Abcam and #sc-7300; Santa Cruz Biotechnology), and anti-NCoR (#ab24552; Abcam). Antibodies used for IHC staining are mentioned below in the “IHC and quantification of IHC analysis” section. EZH2 inhibitors were purchased from Xcess Biosciences Inc. (GSK126, GSK343, and EPZ-6438). Estradiol (E2), tamoxifen metabolite 4-hydroxytamoxifen (4-OHT), and 5-Aza-2′-deoxycytidine (5-Aza) were obtained from Sigma, unless otherwise indicated.
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2

Antibody Validation for Protein Analysis

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Anti-FOXC1 (#8758s) and anti-MET (#3127s) antibodies were obtained from Cell Signaling Technology. Anti-β-actin antibody was purchased from Sigma-Aldrich. Horseradish peroxidase-conjugated anti-mouse and anti-rabbit immunoglobulin G antibodies (AP307P, AP308P) were purchased from Millipore. For immunohistochemistry staining, anti-FOXC1 (# ab223850) antibody was purchased from Abcam. Anti-Brd4 (Bethyl Laboratories, #A301-985a100), anti-P300 (Bethyl Laboratories, #A300-358a), and anti-H3K27ac (Active motif, #39685) antibodies were used for Chip-qPCR. All primary and secondary antibodies for immunoblotting were used at 1:1000 and 1:5000 dilution, respectively. For immunohistochemistry, FOXC1 antibody was diluted at 1:500. For ChIP-qPCR, 3 µg of anti-H3K27ac was used per sample, 5 µg of anti-P300 and Anti-Brd4 were used per sample.
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3

P300 Protein Purification and Chromatin Fractionation

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Cell fractionation was achieved by sequential extraction with 10 mM HEPES (pH 7.9), 10 mM KCl, 1.5 mM MgCl2, 0.34 M sucrose, 10% glycerol, Triton X-100 0.1%, 1 mM DTT, and protease inhibitor and with 3 mM EDTA, 0.2 mM EGTA, 1 mM DTT, and protease inhibitors. An insoluble chromatin fraction was generated by boiling the remaining pellet in Laemmli buffer. Antibodies used for western blotting were anti-H3K27Ac (Abcam), anti-H3K18Ac (Cell Signaling Technology), anti-H3K9Ac (Cell Signaling Technology), anti-histone H3 (Thermo Fisher Scientific), anti-CBP (Santa Cruz Biotechnology), anti-P300 (Bethyl Labs), anti-HDAC1 (Cell Signaling Technology), anti-HDAC2 (Cell Signaling Technology), anti-Lamin B1 (Abcam), anti-tubulin (DM1a Abcam), anti-pan acetyl (Cell Signaling Technology), and anti-GFP (Abcam).
Full-Length P300 Protein Production P300 protein (G324-N2094, WT, and variants of the bromodomain [N1132Y] and HAT domain [Y1467F]) was expressed in Sf9 cells from a pACGP67A vector with a N-terminal FLAG tag and a C-terminal StrepII tag. Protein was isolated using anti-FLAG M2 affinity gel (Sigma) and purified by size exclusion chromatography on an S200 16/60 column.
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