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15 protocols using ritc dextran

1

Visualizing Endosomal Trafficking with RITC-Dextran

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Rhodamine B isothiocynate-dextran (RITC-dextran, Sigma Aldrich, St. Louis, MO, USA) is a fluid that is internalized but not degraded by endosomes [17 (link)]. Cells were harvested, placed in a 35 × 10 mm Petri dish containing 2 mL of HL5 medium, and supplemented with 40 µL of 100 mg/mL RITC-dextran; the cells were incubated for 60 min, washed with fresh media, and allowed to settle on a glass coverslip. All cell lines were photographed using the BrightLine® TXRED filter set to visualize endosomes and the BrightLine® GFP filter set was used to visualize GFP fluorescence on a Nikon 2000SE microscope with IPLab 3.7 software at 100× magnification. Quantification was performed using Fiji by ImageJ. The Pearson’s Correlation Coefficient (PCC) was reported.
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2

RITC-dextran Permeability Assay

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RITC-dextran (average MW ∼70000; Sigma) was added to the top well of the transwell chamber (0.4-μm pore size; Corning) on which treated HUVECs (105 cells per well) were seeded for 72 h. After 30 min, the medium in the bottom well was collected and the appearance of fluorescence was monitored at 544 nm excitation and 590 nm emission [24 (link)]. Each experiment was repeated three times.
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3

Fluid-Phase Endocytosis Assay of Entamoeba histolytica

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The fluid-phase endocytosis assay of E. histolytica trophozoites were performed as described previously [19 (link)]. Briefly, 5×105amoebic transformants were incubated in BI-S-33 medium containing the fluorescent fluid-phase marker RITC-dextran (2 mg ml-1; MW = 70 000; Sigma-Aldrich, Japan) at 35°C for indicated time points. The labeled cells were collected, washed three times with ice-cold PBS. The cell pellets were then suspended in 300 μl of 50 mM Tris-HCl, pH 7.0 containing 1% Triton-X100 and vortexed for 15 s. Fluorescence intensity was measured using a fluorometer (F-2500, Hitachi, Japan) at excitation and emission wavelengths of 570 and 610 nm respectively.
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4

Scrape-Loading and Dye Uptake Assay

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The assay was performed as described in el-Fouly et al. [36 (link)] with modification. The confluent cells on 60-mm dishes were washed with PBS containing 1 mM CaCl2 and immersed in 3 mL of dye cocktail composed of 0.1% Lucifer yellow CH (Sigma-Aldrich) and 0.1% RITC-dextran (Sigma-Aldrich). Several parallel scrape lines were then made with a micropipette tip, and the cells were incubated for 5 min at 37 °C. After rinsed with PBS, the cells dye-coupled with Lucifer yellow were detected under a fluorescence microscope. The cells positive for RITC-dextran were considered to be primarily-scraped but not dye-coupled cells.
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5

Monitoring Retinal Cell Barrier Function

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Primary BREC were isolated and grown in culture as previously described.22 ,23 (link) Cell monolayer ion flux was measured by electrical resistance using an electrical cell-substrate impedance sensing (ECIS)-Zϴ system at 4000 Hz (Applied Biophysics, Troy, NY, USA). BREC were seeded on 8-well 8W10E+ ECIS plates containing gold electrodes. Cells were left to grow overnight, followed by media change to stepdown media (1% serum and 100 nm hydrocortisone) for 48 hours. Cells were treated with atRAL (Sigma) (10 µM), the resistance was recorded for 48 hours after the addition of atRAL at the indicated concentration. BREC were seeded on 0.4 µm pore transwell filters (Corning Costar, Acton, MA, USA) in MCDB media and switched to stepdown media 48 hours before the start of the experiment. The cells were treated with atRAL, emixustat or atRAL, and emixustat at the indicated concentration. Cell monolayer permeability to 70 kDa RITC-dextran (Sigma) was determined as previously described.23 (link)
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6

Transwell-based In Vitro iBRB Model

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HRECs were seeded on 0.1% gelatin pre-coated polyester filter of a transwell device (24-well format, 0.4 μm pore size, Millipore) at the density of 50 000 cells/cm2 and cultured at 37 °C under 5% CO2. The trans-endothelial electrical resistance was monitored for 7 days by Millicell® ERS-2 voltohmmeter (Merck Millipore) until a monolayer of HRECs was formed in each well to simulate iBRB in vitro. The culture medium was replaced by 100 μL and 600 μL of ECM medium containing 1% BSA (Sigma-Aldrich) in upper and bottom wells, respectively, and the cells were starved for 3 h before stimulation. The respective stimuli described in section of cell stimulation together with the fluorescent probe of RITC-dextran (70kDa, Sigma, 5 mg/mL) were added into the upper compartment. After 6-h exposure, 50 μL aliquot of the media in each bottom chamber was collected for the fluorescence measurement (λex/em 543 nm/584 nm). The fluorescent signal of the probe penetrating across the cell monolayer in each group was used for the evaluation of the changes in the permeability of simulated iBRB.
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7

Quantifying Fluid-Phase Endocytosis in Amoebic Transformants

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To measure fluid-phase endocytosis, 5×105 amoebic transformants were incubated in BI-S-33 medium containing the fluorescent fluid-phase marker RITC dextran (2 mg/ml; Mr = 70,000; Sigma-Aldrich, Japan) at 35 °C for indicated time points. The labelled cells were collected and washed three times with ice-cold PBS. The cell pellets were then suspended in 300 μl of 50 mM Tris-HCl, pH 7.0 containing 1% Triton X-100 and vortexed for 15 s. Fluorescence intensity was measured using fluorometer (F-2500, Hitachi, Japan) at excitation and emission wavelengths of 570 and 610 nm respectively.
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8

Permeability Assessment of Airway Epithelial Cells

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hAEpCs were seeded on a chip as described above and cultured on the apical side for 2 days under static and submerged conditions. They were then placed at the air–liquid interface and cultured under static or dynamic conditions for 3 additional days. On day 5, the apical side was washed with PBS with calcium, which was subsequently exchanged with 80 μL of a permeability solution [1 µg mL−1 FITC-sodium (0.4 kDa, Sigma-Aldrich) and 1.5 mg mL−1 RITC-dextran (70 kDa, Sigma-Aldrich) in SAGM™ medium]. The chip was then transferred to the incubator and incubated in static conditions. After 2 h, the apical permeability solution was removed, the apical side was washed once with PBS with calcium, following which the PBS was removed, and the medium in the basal chamber exchanged. The supernatant solution was collected from the outlet well. A 50-µL aliquot of this solution was transferred to a 96-well flat-bottom plate and analyzed with a microplate reader (M1000 Infinite, Tecan) at 460 nm excitation/515 nm emission for FITC-sodium and 553 nm excitation/627 nm for RITC-dextran. The apparent permeability coefficient (Papp) was calculated according to equation (1), dQ/dt being the transport rate and C0, the initial concentration of the permeability solution tested and A the surface area of the permeability barrier. Papp=(dQdt)1C01A
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9

Fluid-Phase Exocytosis Assay of E. histolytica

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The fluid-phase exocytosis assay of E. histolytica trophozoites were performed as described previously [22 (link)]. Briefly, 5X105 amoebic transformants were incubated in BI-S-33 medium containing the fluorescent fluid-phase marker RITC-dextran (2 mg ml-1; MW = 70 000; Sigma-Aldrich, Japan) at 35°C for 3 h to saturate all endocytic compartments with the marker. The labelled cells were collected, washed and re-suspended in warm marker-free BI-S-33 medium, and incubated at 35°C for 6 h (for gene silenced strain and psAP2 vector control cell line) or 2 h (for overexpressor and GFP vector control cell line). At specific time points (0 h, 3 h and 6 h), cells were collected and washed three times with ice-cold PBS. The cell pellets were then suspended in 300 μl of 50 mM Tris-HCl, pH 7.0 containing 1% Triton-X100 and vortexed for 15 s. Fluorescence intensity was measured using a fluorometer (F-2500, Hitachi, Japan) at excitation and emission wavelengths of 570 and 610 nm respectively.
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10

ELT Transport Across Cellular Barriers

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Fresh serum-free media was added to the basal chamber at the beginning of the experiment. Serum-free media was also prepared with 12.5 μM (equivalent to 6.25 nmol) ELT (Selleck Chemicals #S2229) and 10 μM RITC-Dextran (70 kD, Sigma) then added to the apical chamber. The RITC-Dextran is present to monitor tight junction integrity and evidence of paracellular transport since Dextran is not transcytosed when tight junctions are intact. The concentration of ELT used in the transport studies was determined empirically from cytotoxicity studies. The concentration chosen was 50% below that found to be toxic over 24 hours (data not shown). Aliquots from the apical and basal chambers were collected at 0 and 24 hours after the start of the study. Additional aliquots at 3 hours and 6 hours after the start of the study were taken from the basal chamber to monitor ELT transport over the 24-hour time period. The aliquots were analyzed for basal chamber RITC-Dextran accumulation in a fluorescence plate reader (Spectra Max Gemini, Molecular Devices). ELT was then detected in the basal chamber media samples by HPLC.
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