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70ti rotor

Manufactured by Beckman Coulter
Sourced in United States

The 70Ti rotor is a high-speed ultracentrifuge rotor designed for Beckman Coulter centrifuge systems. It is capable of achieving speeds up to 70,000 RPM, enabling the separation and isolation of a wide range of biological samples, including cells, organelles, and macromolecules.

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111 protocols using 70ti rotor

1

Isolation and Characterization of SARS-CoV-2-Derived Extracellular Vesicles

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U1 cART EVs were isolated via ultracentrifugation. First, supernatants were centrifuged at 1200 rpm for five minutes to pellet any cellular debris. The resulting supernatant was then centrifuged at 100,000×g for 90 min using the 70Ti rotor (Beckman). The pellet was washed with PBS followed by another centrifugation at 100,000×g for 90 min. EV pellets were resuspended in PBS and then frozen at − 20 °C for downstream analysis.
A549 cells were infected with 5.0 × 105 TCID50 of human coronavirus OC43 for 96 h. Supernatants were collected and centrifuged at 2000 rpm for five minutes, filtered through a 0.22 µm sterile filter, and then centrifuged at 100,000×g for 90 min using the 70Ti rotor (Beckman). The pellet was resuspended in sterile PBS and treated with 45 mJ/cm3 of UV(C) LED irradiation. Samples of UV(C)-treated EVs (1, 5, 10 µL) were added to Vero cells for two passages and no viral outgrowth was detected (data not shown). Remaining EVs were frozen at − 20 °C for downstream analysis.
U1 cART and OC43 EVs were analyzed via NTA using the ZetaView Z-NTA (Particle Metrix). Prior to analysis the equipment was calibrated per the manufacturer’s recommendation and each EV sample was diluted in deionized water prior to analysis. The acquired data was analyzed by the instrument’s built-in software.
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2

Isolation of Outer Membrane Vesicles from E. coli

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E. coli was grown in LB broth (500 mL, 37 °C, 180 rpm) until reaching an OD600 nm value of 1. Bacterial cells were removed through centrifugation at 3000× g for 20 min at 4 °C. Residual bacteria and cellular debris were eliminated by sequential 0.45 and 0.22 µm filtration (VWR Scientific, Bridgeport, NJ, USA). OMVs were collected by centrifugation at 100,000× g for 2 h at 4 °C (Optima XPN-100 Beckman Coulter and rotor 70Ti, Palo Alto, CA, USA). The vesicles were washed in sterile PBS1X through ultracentrifugation and re-suspended in 150 μL of PBS1X. LB agar plates were used to check the sterility of the OMVs. The purified vesicles were stored at −20 °C until use [28 (link)].
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3

Outer Membrane Vesicle Purification

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OMV purification was performed following the protocol used by Martora et al. with some slight modifications [13 (link)]. Briefly, three K. pneumoniae strains were grown in LB broth (600 mL, 37 °C, 180 rpm) to an OD600 nm value of 1. The bacterial cells were decanted through centrifugation and supernatants were filtered at 0.45 µm and 0.22 µm (Millex-GS filters, Millipore, Darmstadt, Germany). The cell-free supernatants were centrifuged at 100,000× g for 2 h at 4 °C (centrifuge Optima XPN-100 Beckman Coulter and rotor 70Ti, Palo Alto, CA, USA). The pellets were washed in sterile PBS1X by ultracentrifugation and re-suspended in 200 µL of PBS1X. The sterility of the OMVs was checked on LB agar plates. The purified OMVs were stored at −20°C after dynamic light scattering (DLS) analysis.
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4

Production and Purification of AAV Vectors

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AAV vectors serotype 5 encoding for GluA1-Halo or PSD95-Halo knock-ins were produced as described in detail in [77 (link)] using helper plasmids obtained from [78 (link)]. In brief, HEK293T cells were plated 1 day before transfection in Dulbecco’s Modified Earl’s Medium (DMEM) supplemented with 10% fetal calf serum (FCS) and 1% pen/strep. At 2 hours before transfection, medium was exchanged with Iscove’s Modified Dulbecco’s Medium (IMDM) containing 10% FCS, 1% pen/strep, and 1% glutamine. Transfection was performed with polyethylenimine (PEI). At 1 day after transfection, medium was exchanged with fresh IMDM with supplements. At 3 days after transfection, medium was aspirated, and cells were harvested using a cell scraper. After three freeze/thaw cycles and treatment with DNAseI, AAV vectors were purified using an iodixanol density gradient and ultracentrifugation (70 minutes, 69,000 rpm at 16°C using rotor 70Ti [Beckman Coulter]). The fraction containing AAV particles was concentrated with centrifugation (3,220g, 15 minutes at RT) using an Amicon Ultra 15 column (Merck Millipore). Columns were washed 3 times using D-PBS containing 5% sucrose. AAV vectors were stored at −80°C until use. Titers were measured using qPCR.
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5

Reconstitution of MelBSt into Proteoliposomes

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The reconstitution into proteoliposomes was carried with E. coli Extract Polar (Avanti) at a ratio of 1:1.33 (mg:mg). Briefly, 40 mg of the lipids dissolved in 1.2% OG was mixed with 30 mg of the [U-13C,15N]-labeled MelBSt samples in UDM. After a 30-min incubation at room temperature, the mixture was subjected to a 74-fold dilution by adding buffer containing 20 mM NaPi, pH 7.5, and 150 mM NaCl, and incubated for another 30 min with stirring before ultracentrifugation at 47,000 rpm on a Beckman rotor 70 Ti at 4 °C for 2 h. The pellets were re-suspended in the same buffer and subjected to three cycles of freeze-thaw-sonication. The sonication was carried out in an ice-cold bath sonicator (Branson 2510), 5 s for three times. The samples (5-mL) were washed once with 20 ml of the same buffer and concentrated to a protein concentration of 44 mg/ml by ultracentrifugation under same conditions. About 27 mg MelBSt proteoliposomes was obtained.
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6

Membrane Cholesterol Quantification

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Sk-Hep1 cells, BTECs, or LSECs were lysed in 0.5 mL of lysis buffer (HEPES, pH 7.4, 20 mM, KCl 10 mM, MgCl2 2 mM, EGTA 1, and DTT 1 mM) by gentle scraping. Following an incubation time of 15 min on ice, the lysate was passed through a 25-gauge needle 10 times and kept on ice for a further 20 min. To remove nuclei and mitochondria, samples were centrifuged at 10,000× g for 5 min at 4 °C. The supernatant was subsequently ultra-centrifuged (Beckman Coulter’s, rotor 70Ti) at 100,000× g for 1 h at 4 °C. The new supernatant (i.e., the cytoplasm fraction) was discarded, whereas the pellet (i.e., the membrane fraction) was rinsed with 200 µL of PBS and kept at −80 °C until further processing. The protein content of the membrane extracts was measured on a 50 µL aliquot, using the BCA Protein Assay kit (Sigma Aldrich). The amount of cholesterol was measured on 100 µg membrane protein using the fluorimetric Cholesterol/Cholesteryl Ester Assay Kit—Quantitation (Abcam, Cambridge, UK), as per the manufacturer’s instructions. The results are expressed as µmol cholesterol/mg membrane protein, based on the calibration curve. Membrane cholesterol assay was performed in three independent experiments.
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7

Isolation and Immunoblotting of Bacterial Membranes

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Bacterial membranes were isolated from 50 ml of late exponential phase cultures by cellular lysis using osmotic shock as described in Mercante et al. (2015) (link). After ultracentrifugation of 4 h at 40,000 × g (70 Ti rotor, Beckman), the pellet containing membrane proteins was resuspended in cracking buffer. The supernatant containing cytoplasmic proteins was precipitated with TCA as previously described. Proteins were separated by SDS–PAGE. Immunoblotting was performed using mouse anti-FLAG M2 monoclonal antibody (Sigma) in the Li-Cor Odyssey equipment. As a control of protein charge rabbit anti-Omp19 polyclonal antibody was used (Mercante et al., 2015 (link)). Anti-mouse and anti-rabbit fluorescent antibodies were used for detection in the Li-Cor Odyssey equipment. Analysis of relative band intensity was made using the Odyssey software.
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8

Ultracentrifugation of Extracellular Vesicles

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Five millilitres of serially centrifuged secretome was 1:2 diluted with PBS and centrifuged at 100,000× g for 9 h at 4 °C in a 70Ti rotor (Beckman Coulter, Fullerton, CA, USA), and EV pellets processed for electron microscopy or miRNA expression.
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9

Outer Membrane Vesicles Affect Amoeba Viability

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OMVs were isolated by ultracentrifugation, as described previously [16 (link)]. V. cholerae strains were grown in broth culture to late exponential phase. Broth cultures were then centrifuged at 8,000 g (30 min, 4°C) in a JA-25.50 rotor (Beckman Instruments Inc.). Filtered (0.22 μm; Millipore) supernatants were centrifuged at 85,000 g (2 h, 4°C) in a 70 Ti rotor (Beckman Instruments Inc.) to collect OMVs. Pellets were washed twice with PBS, suspended in PBS to a total volume of 500 μL, and used as the OMVs preparation. Concentration of total protein in the OM vesicles was measured spectrophotometrically by the Bradford assay (Bio-Rad).
The effect of outer membrane vesicles on the viability of A. castellanii was examined by incubation of 50 μL amoeba cell suspension containing 106 cell/mL with 50 μL OM vesicle preparation from each bacterial strain or with 50 μL BPS for controls. Triplicate experiments were performed and the viability of amoebae was examined after 2 hours by viable count utilizing erythromycin B stain (ATCC).
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10

Isolation of Total Membrane Fractions

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Total membrane
fractions were isolated
from 1 L LB cultures. Cells were harvested by centrifugation (4000
g for 10 min) and resuspended in 10 mL of cold lysis buffer (300 mM
NaCl, 50 mM NaH2PO4, 15% glycerol, 2 mM dithiothreitol,
pH 7.5). The cells were lysed by brief sonication steps on ice and
the resulting lysates were clarified by centrifugation at 10,000 g
for 15 min. The supernatant was then subjected to ultracentifugation
on a Beckman 70Ti rotor at 42,000 rpm (130,000 g) for 1 h at 4 °C.
The resulting pellet was finally resuspended in 5 mL of cold lysis
buffer and homogenized.
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