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Cleaved caspase 3

Manufactured by Santa Cruz Biotechnology
Sourced in United States, China, United Kingdom

Cleaved caspase-3 is a laboratory product used in research applications. It is a protein fragment that is generated during the activation of the caspase-3 enzyme, a key mediator of apoptosis or programmed cell death. The core function of cleaved caspase-3 is to serve as a biomarker for the detection and analysis of apoptotic processes in biological samples.

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151 protocols using cleaved caspase 3

1

Western Blot Analysis of Apoptosis Markers

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At reperfusion 24 hr after MCAO injury, rat were sacrificed and brains were washed rapidly with ice-cold PBS, and collected. Tissues were lysed with ice-cold RIPA buffer (Sigma-Aldrich, St. Louis, MO, USA). The lysates were centrifuged at 13,200 rpm for 1 hr at 4℃ to produce whole-cell extracts. Protein content was quantified using the BCA method (Pierce, Rockford, IL, USA). Protein (20 µg) was separated on a 10% SDS-polyacrylamide (PAGE) gel and transferred onto a polyvinylidene difluoride (PVDF) membrane. After blocking with 5% bovine serum albumin, prepared in Tris-buffered saline/Tween (TBS-T; 20 nM Tris [pH 7.2], 150 mM NaCl, and 0.1% Tween 20), for 1hr at room temperature (RT), immunoblots were incubated overnight at 4℃ with primary antibodies that specifically detect Bcl 2 associated X protein (Bax) (1:1000, Abcam, Cambridge, MA, USA), Cleaved caspase-3 (1:1000, Santa Cruz Biotechnology, Santa Cruz, CA, USA), or β-actin (1:2000, Cell Signaling Technology, Danvers, MA, USA). Next, blots were incubated with HRP-linked anti-mouse and -rabbit IgG antibodies purchased from Abcam (Cambridge, UK) for 1 hr at RT. Enhanced chemiluminescence was performed by ECL (Pierce) [34 (link)].
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2

Comprehensive Western Blot Analysis

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Cell extracts were prepared in RIPA (radioimmunoprecipitation assay) buffer supplemented with Complete protease inhibitor cocktail (Roche). Equal amounts of cell extracts were resolved on acrylamide: bis-acrylamide gels and electroblotted onto PVDF membrane (Immobilon-P, Millipore) and probed with appropriate primary and HRP-conjugated secondary antibodies (Jackson ImmunoResearch). When necessary, membranes were stripped using Restore Western Blot Stripping Buffer (Thermo) and reprobed with anti-PUMA, anti-GAPDH, anti-S100A4, anti-MMP-2/9, anti-bcl-2, anti-bax and cleaved-caspase-3 (Santa Cruz, Shanghai, China). Unless otherwise specified, western blots were representative of n = 3.
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3

Protein Extraction and Western Blot Analysis in A549 Cells

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Total cellular protein was extracted from A549 cells using RIPA lysis buffer (Beyotime, Shanghai, P.R. China). Proteins were quantified using a BCA Protein Assay Kit (Pierce, Bonn, Germany). Then samples were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto nitrocellulose membranes (Whatman, Dassel, Germany). The blots were blocked in 5% skim milk at room temperature for 1 h and incubated overnight with specific primary antibodies: Bax, Bcl-2, cleaved caspase 3, pro caspase 3, CDK2, cyclin E, p27, p21, c-Jun, p-c-Jun, p65, p-p65, IκB-α, p-IκB-α, BTG2, p53, and GAPDH (all from Santa Cruz Biotechnology, Santa Cruz, CA, USA) at 4°C. Afterward, the blots were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies at room temperature for 2 h. The bands were imaged using the WEST-ZOL-plus Western Blot Detection System.
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4

MTT Assay for Cytotoxicity Evaluation

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3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) is the product of SRL, N-acetyl cysteine (NAC) was purchased from Sigma Aldrich, and HCT116 and HEK293 cell lines were obtained from the National Centre For Cell Science (NCCS), Pune, Govt. of India. HCT 116 cell lines were cultured in DMEM Dulbecco's Modified Eagle's Medium (DMEM), supplemented with 10% fetal bovine serum (FBS) and 1% penicillin and streptomycin antibiotics, where trypsin and ethylenediaminetetraacetic acid (EDTA) were all purchased from Gibco BRL. Tissue culture plastic wares were obtained from NUNC (Roskidle, Denmark). DAPI (4′,6-diamidino-2-phenylindole dihydrochloride), acridine orange (AO), and ethidium bromide (EtBr) were obtained from Invitrogen (California) and BCA protein assay reagent from Fermentus (EU). The primary antibodies for Bcl2, Bax, caspase 3, cleaved caspase-3, caspase-9, cleaved caspase-9, cytochrome c, P53, cleaved PARP, and β-actin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). DCF-DA was obtained from Sigma-Aldrich (MO, USA). An Annexin-V FITC apoptosis detection kit was obtained from Calbiochem (CA, USA). Doxorubicin was purchased from Sigma Aldrich.
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5

Isolation and Quantification of Cellular and Extracellular Vesicle Proteins

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Total protein was isolated from cells (1×106) or EVs (10 μg) using cell lysis buffer (Thermo Scientific, USA). The total protein was quantified by using BCA Protein Assay Kit (Abcam, China). The same amount of total protein of cells or EVs was denatured in sodium dodecyl sulfate (SDS). Total protein was then separated by SDS-PAGE gel and then transferred onto PVDF (polyvinylidene difluoride) membranes (Invitrogen, USA). The membranes were blocked in 5% non-fat milk for 1 h and incubated with primary antibodies overnight at 4° C, followed by incubation with secondary antibodies at room temperature for 1 h. The primary antibodies were as follows: CD9 (1:1000), SNX5 (1:500), GAPDH (1:2000), CD54 (1:1000), Annexin (1:1000), Bcl-2 (1:1000), cleaved-caspase3 (1:1000), cleaved-caspase9 (1:2000), E-cadherin (1:1000), N-cadherin (1:1000), Vimentin (1:1000), Calnexin (1:500), and MMP9 (1:1000), and secondary antibody goat anti-mouse IgG-HRP (1:2000) were purchased from Santa Cruz Biotechnology (Shanghai, China). The protein bands were visualized by the ECL chemiluminescence reagent (Millipore, USA) and quantified using ImageJ [19 ].
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6

Protein Expression Analysis by Western Blot

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Cells were harvested and homogenized in RIPA lysis buffer and centrifuged at 12,000 rpm for 20 min at 4°C. Protein concentrations of the supernatants were determined using BCA Protein Quantification Kit (Vazyme biotech co., Itd.). Western blot analysis was performed as previously described [38 (link)], using rabbit polyclonal antibodies to human survivin and c-IAP1 (R&D systems, MN), XIAP and Cyclin B1 (Cell signaling, MA), phosphor-Cdc25C, Cdc2, phospho-Cdc2, cleaved PARP and cleaved caspase-3 (Santa Cruz, CA).
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7

Hepatic Protein Extraction and Western Blot Analysis

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The total protein of hepatic tissue was extracted, and the protein concentration was determined using a bicinchoninic acid assay reagent (Pierce Chemical Company, IL, USA). Each 40 μg aliquot of protein was separated by 8% sodium dodecyl sulfate–polyacrylamide gel electrophoresis. The protein was electroblotted onto polyvinylidene difluoride membranes (Amersham Biosciences, NJ, USA). Membranes were blocked using 5% nonfat milk for 2 h at room temperature. Then, samples were then incubated with primary antibodies for cleaved caspase-3 (1 : 1000), Bax (1 : 400), Bcl-2 (1 : 400), NLRP3 (1 : 300), ASC (1 : 200), caspase-1 (1 : 200) (Santa Cruz Biotechnology, Inc., CA, USA), irisin (1 : 500; Phoenix Pharmaceuticals, CA, USA), and GAPDH (1 : 1000; Cell Signaling Technology, Inc., MA, USA) at 4°C overnight. The membranes were then washed three times with TBST and incubated for 1 h at 37°C with anti-rabbit IgG or anti-mouse IgG secondary antibodies (1 : 2000; ZSGB-Bio, Beijing, China). Finally, immunoreactivity was detected using enhanced chemiluminescence reagent.
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8

Puerarin Attenuates Oxidative Stress and Inflammation

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Puerarin (PEU, purity >99.5%), dimethyl sulfoxide (DMSO), 2,7-dichorofluorescin diacetate (DCFH-DA), and 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were obtained from Sigma (St. Louis, MO, U.S.A.). Dulbecco’s modified Eagle medium (DMEM) and fetalbovine serum (FBS) were purchased from Life Technologies Inc (Gaithersburg,MD, USA). The levels of interleukin 1 beta (IL-1β), interleukin-6 (IL-6) and cytokines IL-10 commercially available enzyme-linked immunosorbent assay (ELISA) kits were obtained from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Primary antibodies against Bcl-2, cleaved-caspase-3, Keap1, Bax, Nrf2, HO-1, NQO1and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). BCA protein assay kit, Horseradish peroxidase (HRP) conjugated secondary antibody and enhanced chemiluminescence (ECL) reagent were from Pierce Chemical (Rockford, IL, USA). Annexin V‑fluorescein isothiocyanate (FITC)/propidium iodide (PI) kit and the lactate dehydrogenase (LDH) assay kit were from BD Biosciences (San Jose, CA, USA). All other reagents used in this experiment were of analytical grade commercially available.
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9

Quantitative Protein Analysis via Western Blot

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Total proteins of cells were prepared using lysis buffer. Equal amount of protein was loaded on an SDS-PAGE and then transferred to a PVDF membrane (Millipore, USA). After the membrane was transferred, samples were blocked with TBST containing 5% bovine serum albumin for 1 h, then the membranes were incubated with primary antibody (1:1000) overnight at 4 °C with transferred membrane face up. Primary antibodies employed in this study including LRRC4(sc-376475), Bcl-2(#15071), Cleaved-Caspase-3(#9662), GAPDH(#2118), SDF-1(#3530), and CXCR4(#85578) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA) and Cell Signaling Technology (Beverly, MA, USA). After washing and incubation, the membranes were incubated with secondary antibody (1:2000) in TBST. The proteins were visualized with ECL-plus reagents. The density of the bands was analyzed by Image J software.
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10

Western Blot Analysis of Protein Levels

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Protein levels in cells were measured using Western blot assay. The transfected cells were lysed in Triton lysis buffer (Solarbio, Beijing, P.R. China) for 30 min on ice, and the protein concentration was determined by Bicinchoninic Acid (BCA) Kit (Solarbio). The protein was resolved over 10–12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (20 (link)). The membrane was blocked in blocking buffer (5% nonfat milk) for 2 h at room temperature, and then incubated with primary antibodies against p-Akt (1:1,000), Akt (1:1,000), Bcl-2 (1:1,000), Bax (1:1,000), p27 (1:1,000), p21 (1:1,000), procaspase 3 (1:1,000), cleaved caspase 3 (1:1,000), and actin (1:2,000) (Santa Cruz Biotechnology, Santa Cruz, CA, USA) overnight at 4°C. A secondary antibody (1:2,000) (Cell Signaling Technology, Danvers, MA, USA) was used for 1 h at room temperature. The bands were detected by chemiluminescence and autoradiography using an X-ray film (Applygen, Beijing, P.R. China), and densitometric measurements were performed using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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