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16 protocols using lipoteichoic acid

1

Lipid-Based Nanoparticle Formulations

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1,2-Dioleyloxy-3-dimethylaminopropane
(DODMA), 1,2-dipalmitoyl-sn-glycero-3-phospho((ethyl-1′,2′,3′-triazole)triethylene
glycolmannose (PPM), cholesteryl hemisuccinate (CHEMS), and 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(lissamine
rhodamine B sulfonyl) were purchased from Avanti Polar Lipids (Alabama,
U.S.A.). Lipoid S100 (soy phosphatidylcholine (SPC)) was a kind gift
from Lipoid GmbH (Ludwigshafen, Germany). Uranyless was purchased
from Electron Microscopy Sciences (U.S.A.). Methanol was purchased
from VWR International S.A.S. (Fontenay-sous- Bois, France). 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide (MTT), crystal violet 1%, Dulbecco Modified Eagle’s
medium (DMEM) high glucose, components of encapsulation buffer (EB)
(5 mM Tris-HCL, 1 mM ethylenediaminetetraacetic acid (EDTA), 10 mM
MgCl2, 10 mM NaCl), α-hemolysin, lipase (from wheat germ, ∼0.1
U/mL), phosphate-buffered saline (PBS), fetal bovine serum (FBS),
penicillin-streptomycin, 5× trypsin, lipoteichoic acid (LTA),
and vancomycin were purchased from Sigma-Aldrich (Norway). AlexaFluor-594
labeled lipopolysaccharide (LPS) and AlexaFluor-594 labeled dextran
were purchased from Thermo Fisher Scientific. Tryptic soy broth (TSB)
and Luria broth agar (LA) were obtained from University Hospital of
North Norway (Tromsø, Norway). All the DNA sequences were purchased
from Integrated DNA Technologies (Belgium).15 (link)
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2

Stimulating NMuMG Cells with LPS and LTA

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NMuMG cells were seeded at a density of 4×105 cells/well in 6-well collagen-coated plates (#NCO3506, Corning, Corning, NY, USA) and incubated for 15 ± 1 h before experiments. After incubation, the cells were rinsed with sterile phosphate-buffered saline (PBS) and treated with LPS from Escherichia coli O111:B4 (#115K4029, Sigma-Aldrich, St. Louis, MO, USA) or lipoteichoic acid (LTA) from Bacillus subtilis (L3265, Sigma-Aldrich), which are outer membrane proteins of the Gram-negative and Gram-positive bacteria, respectively. Because our previous studies indicated significantly different responses in cultured mouse colonic, type-II alveolar, and pulmonary epithelial cells [16 (link),17 (link),18 (link)], LPS and LTA were diluted to 10 µg/mL in DMEM without FBS. NMuMG cells treated with LPS or LTA were incubated for 2 h at 37 °C in a 5% CO2 atmosphere.
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3

Immune Cell Activation Assay

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Fura-2/acetoxymethyl ester (AM) was purchased from Molecular Probes (Eugene, OR). Pam3Cys4 and staurosporine were purchased from Enzo Life Science (Farmingdale, NY). Phorbol-12-myristate-13-acetate (PMA), fMLP, LPS (Escherichia coli 0111:B4), and lipoteichoic acid were from Sigma-Aldrich (St Louis, MO). Digitonin was from Biosynth (Napcr-ville, IL). C5a and keratinocyte-derived cytokine (KC) were purchased from R&D (Minneapolis, MN) and Peprotech (Rocky Hill, NJ), respectively.
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4

Endothelial Cell and Macrophage Responses to Microbial Stimuli

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Short-chain fatty acids (SCFA) (acetate, butyrate, propionate, formate), Trichostatin A, polymyxin B, lipopolysaccharide (LPS), and lipoteichoic acid (LTA) were purchased from Sigma-Aldrich, St. Louis, MO, United States. Pam3CysSKKK and FSL-1 were both obtained from EMC Microcollections, Tubingen, Germany. The following cell lines were used in this study: HUVEC (primary human umbilical vein endothelial cells, used at passage 6 or less, Promocell, Heidelberg, Germany), EOMA (129 background endothelial cell line, ATCC, Manassas, VA, United States), SVEC-40 (C3H/HeJ TLR4 mutant background endothelial cell line, ATCC), and MH-S (wild-type BALB/c alveolar macrophage cell line, ATCC).
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5

Antimicrobial Peptide Characterization

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Dimethyl sulfoxide, bovine serum albumin (fraction V), cardiolipin, L-α-phosphatidyl-DL-glycerol, peptidoglycan purified from S. aureus, lysozyme, and lipoteichoic acid purified from S. aureus were purchased from Sigma-Aldrich. Cholesterol, 2-dioleoyl-sn-glycero-3-phosphocholine, and 2-dioleoyl-sn-glycero-3-phosphoethanolamine were purchased from Avanti Polar Lipids Inc. peptidoglycan purified from E. coli was purchased from InvivoGen. Calcein was purchased from Dojindo. Triton X-100 was purchased from Thermo Fisher Scientific. Lipopolysaccharide purified from E. coli 0111:B4 was purchased from List Biological Laboratories, Inc. Synthetic lipid A was purchased from Peptide Institute Inc. Ruby protein gel stain and Any kDTM precast polyacrylamide gels were purchased from Bio-Rad.
Antimicrobial peptides and biotin-labeled antimicrobial peptides were commercially synthesized by Hayashi Kasei, Thermo Fisher Scientific, and the Toray Research Center. C-terminals of the synthetic peptides were modified by amidation. All peptides were initially suspended in Dimethyl sulfoxide.
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6

Lipid Modulation and Antibody Characterization

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Lipoteichoic acid from the Gram-positive bacteria Staphylococcus aureus, thapsigargin (Tg), STS, bovine serum albumin, palmitic acid, stearic acid, oleic acid, linoleic acid, fluvastatin, simvastatin, lovastatin, and pravastatin were purchased from Sigma (Saint-Quentin Fallavier, France). oxLDL was purchased from Clinisciences (Nanterre, France). LDL was isolated from the plasma of normolipidemic healthy human donors by standard sequential ultracentrifugation of discontinuous KBr gradients. LDL were acetylated (acLDL) by addition of 1.5 μL acetic anhydride per milligram of LDL in 50 % ice-cold saturated sodium acetate over a 1-hour period at 4 °C. The acLDL was dialyzed against 150 mM NaCl, 5 mM Tris–HCl, and 0.3 mM EDTA, pH 7.4 at 4 °C and gave a single band on agarose electrophoresis. Anti-Ro60 (TROVE2) and anti-Argonaute 2 antibodies were purchased from GmbH and Wako, respectively.
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7

Antimicrobial Compound Screening Protocol

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Sanguinarine (SA), 6-ethoxysanguinarine (6-ES), 6-methoxydihydrosanguinarine (6-MS), chelerythrine (CH), and dihydrochelerythrine (DICH) were purchased from Chengdu Biopurify Phytochemicals Ltd. (Chengdu, China). Poloxamer 407 (P407) was purchased from BASF (Ludwigshafen, Germany). 3,3′-Dipropylthiadicarbocyanine iodide (DISC3 (5)) was purchased from Aladdin (Shanghai, China). Peptidoglycan and lipoteichoic acid were purchased from Sigma-Aldrich (St. Louis, United States). SYTO™ nine Green Fluorescent Nucleic Acid Stain (SYTO 9) was purchased from Thermo Fisher (Waltham, United States). Phosphatidylglycerol (PG), cardiolipin (CAL), and lysyl-phosphatidylglycerol (lysyl-PG) were purchased from Avanti Polar Lipids, Inc. (Alabaster, United States). Filamentous temperature-sensitive protein Z (FtsZ) was purchased from Cytoskeleton Inc. (Denver, United States). Propidium iodide (PI), dichlorodihydrofluorescein diacetate (DCFH-DA), and enhanced ATP assay kits were purchased from Beyotime (Shanghai, China).
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8

Assessing NAg Effects on Cell Envelope

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NAg effects on the bacterial cell envelope. The studies were performed by exposing isolated cell envelope components, the peptidoglycan (from B. subtilis, code 69554, Sigma-Aldrich), lipopolysaccharide (from E. coli 0111:B4, code L2630, Sigma-Aldrich), lipoteichoic acid (from B. subtilis, code L3265, Sigma-Aldrich) and phosphatidylethanolamine (from E. coli, Auspep), to NAg (finely dispersed flamesprayed Ag, dTEM = ~2 nm, on inert 30 nm TiO2 support). 4 Each cell envelope component (2.0 mg L -1 ) was exposed to NAg (0.12 mg Ag L -1 and 2.0 mg Ag L -1 , representing the lower and higher exposure dosages at 1:0.06 and 1:1 mass ratios, respectively 28 ) in water for 2 h at 37ºC under dark condition. The latter is to avoid the photocatalytic inactivation of the TiO2 support. 4 Following exposure, the biomolecules were lyophilised for water removal. Untreated biomolecules and biomolecules incubated in water (no silver) were used as controls. The ATR-FTIR spectra (Nicolet 6700) were acquired by performing 64 scans (with 4 cm -1 spectral resolution) for each sample. The spectra of only NAg were subtracted from those of the exposed cell envelope components.
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9

Synthesis of Mannan-BAM Conjugate

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Mannan and polyinosinic–polycytidylic acid sodium salt were obtained from Sigma-Aldrich (St. Louis, Mo). Lipoteichoic acid was obtained from Sigma-Aldrich (St. Louis, Mo) and InvivoGen (San Diego, CA). Resiquimod was obtained from Tocris Bioscience (Minneapolis MN). Anti-mouse CD40 (clone: FGK4.5/GFK45) was obtained from BioXCell (West Lebanon, NH). Biocompatible anchor for cell membrane (BAM) was obtained from NOF America Corporation (White Plains, NY).
Mannan-BAM synthesis was performed as previously reported.[9 (link),11 (link),14 (link)] Aminated Mannan was prepared by reductive amination.[42 (link)] Mannan solution in an environment of ammonium acetate (300 mg ml−1) was reduced by 0.2 M sodium cyanoborohydride at pH 7.5 and 50 °C for five days. Solution was further dialyzed using MWCO 3500 dialysis tubing (Serva, Heidelberg, Germany) against PBS at 4 °C overnight. Binding of BAM on amino group of Mannan was performed at pH 7.3 according to Kato et al.[10 (link)] During one hour at room temperature N-hydroxysuccinimide (NHS) group of BAM reacted with amino group of Mannan. Solutions obtained after dialysis as above was stored frozen at −20 0C until use.
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10

Synthetic Biomolecules for Cell Targeting

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Tissue culture media and supplements, laminarin from Laminaria digitata, mannan from Saccharomyces cerevisiae, lipopolysaccharides (LPS) from Escherichia coli, lipoteichoic acid (LTA) from Bacillus subtilis, dithiothreitol (DTT), Tris(2-carboxyethyl)phosphine hydrochloride (TCEP), DAPI, and f-MLF (N-Formyl-methioninyl-leucyl-phenylalanine) were obtained from Sigma-Aldrich (St. Louis, MO, USA). 4-(N-Maleimidomethyl) cyclo-hexanecarboxylic-acid N-hydroxysuccinimide ester (SMCC) was purchased from Thermo Scientific (Erembodegem, Belgium). Biocompatible Anchor for cell Membrane (BAM, Mw 4000) and N-(Succinimidyloxy-glutaryl)-L-α-phosphatidylethanolamine, Dioleoyl (DOPE) were obtained from NOF EUROPE (Grobbendonk, Belgium). Anti-CD11b-FITC conjugate was obtained from MACS Miltenyi Biotec.
Monomannosyldekalysine was synthesized by Vidia (Prague, Czech Republic). Mannose-(G)5-(K)12, mannose-(G)5-(K)10-STE (STE means stearic acid), f-MLF-(G)5-(K)12, f-MLF-(G)5-(K)10-STE, MLF-(G)5-(K)10-STE, and f-MLFKK were synthesized by Schafer-N (Copenhagen, Denmark).
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