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Cytation 3 plate reader

Manufactured by Agilent Technologies
Sourced in United States

The Cytation 3 is a multi-mode microplate reader designed for diverse cell-based and biochemical applications. It combines high-performance detection technologies, including fluorescence, luminescence, and absorbance, within a compact, automated instrument.

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142 protocols using cytation 3 plate reader

1

Bioluminescent Growth Assay Protocol

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For the bioluminescence growth assays, overnight cultures were back-diluted to an OD 600 = 0.0005 in 25 ml LM with selective antibiotics as required and incubated at 30C shaking at 275 RPM. The OD 600 was recorded every 45 minutes using a spectrophotometer, and bioluminescence was measured in black-welled clear-bottom 96-well plates using the BioTek Cytation 3 Plate Reader (gain set at 160). For endpoint bioluminescence assays, strains were back-diluted to 1:1,000 in 5 ml LM with selective antibiotics as required and incubated at 30C shaking at 275 RPM for 7 h. 200 ul of the culture was transferred to a black-welled clear-bottom 96-well plate and the OD 600 and bioluminescence were measured using the BioTek Cytation 3 Plate Reader (gain 160). For growth assays, overnight cultures were back-diluted 1:1,000 in 200 µl LM in a 96-well plate, and incubated at 30°C shaking in the BioTek Cytation 3 Plate Reader.
OD 600 was recorded every 30 minutes in the plate reader for a total of 24 hours.
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2

Quantifying Protein Content via BCA Assay

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Total protein content of BV, TZ, Se-BV or Se-TZ after dialysis was determined using the Bicinchoninic acid (BCA) assay kit. Ten µL of BV, TZ, Se-BV or Se-TZ were diluted in 90 µL of phosphate-buffered saline followed by 2 mL of working reagent. After the addition of working reagent, the samples were incubated in cuvettes at 37 °C in a water bath for 30 min. One empty 96-well plate was kept in the incubator. After 30 min of incubationm both the cuvettes and 96-well plate were cooled down to room temperature. Two-hundred-and-twenty-five µL of the colored solution from cuvette was added to each of the three wells in the 96-well plate. Absorbance was read using a Cytation 3 plate reader (BioTek) at 562 nm absorption. Protein concentrations were determined from a standard curve prepared from a serial dilution of bovine gamma globulin. Protein concentrations were also determined using a Cytation 3 plate reader (BioTek).
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3

Ras-Induced Cell Transformation Assay

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For focus formation assays, NIH-3T3 cells were transfected with H-rasG12V (0.5 μg) and indicated transgenes and/or empty vector (2.5 μg) in a 6 well plate using lipofectamine LTX and plus reagent. After 2 days, cells were split and equal numbers of cells (0.5–0.7 million) were plated in a 6 cm dish. Cells were grown to confluence with medium exchanges every 2–3 days (after 4 days 4% serum media were used) for 2–3 weeks, until foci became visible, then cells were fixed in 4% cracked PFA for 30 min, then stained with crystal violet solution and destained with water as required. For scratch/wound healing assay, cells on glass plates were grown to confluence then scratched using a glass pipette to introduce a central linear scratch across the surface (two scratches were made perpendicular to each other and analyzed separately). 2D cell migration into the wound was measured by imaging on a Biotek Cytation III plate reader. The plot was generated by measuring the initial wound width and dividing the width of the wound as a function of time by the initial width for each set. Wound widths varied by less than 25% across all data sets.
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4

Plate Reader and Confocal Imaging

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Plate reader assays were carried out on a Biotek Cytation III plate reader.
All confocal imaging experiments except those involving U2OS cells were carried out on a Zeiss LSM710 confocal microscope (Cornell Biotechnology Imaging Core Facility), equipped with an Inverted Axio Observer.Z1 microscope with 405, 458, 488, 514, 543, 561, and 633 nm laser lines. All U2OS cell-imaging experiments were performed on a Zeiss LSM700 confocal microscope (EPFL Bioimaging and Optics Platform), equipped with an Inverted Axio Observer.Z1 microscope with 405, 488, 555, and 639 nm laser lines.
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5

Quantification of MC Degranulation

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MC degranulation was evaluated by a chromogenic assay for β-hex. β-hex in the supernatants and cell lysate (lysed with 1% Triton X-100 in Tyrode’s buffer) was quantified by a hydrolysis of p-nitrophenyl-N-acetyl-β-D-glucopyranoside (Sigma Aldrich, Saint Louis, MO, USA) in a 0.1 M sodium citrate buffer (pH 4.5) for 120 min at 37 °C. OD was evaluated at a wavelength of 410 nm using a Cytation 3 plate reader (Agilent Technologies, Santa Clara, CA, USA). The percentage release of β-hex was calculated using the following formula:
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6

Quantifying SARS-CoV-2 Antibody Response

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ELISA was performed as previously described.31 (link) Microtiter plates were coated with 1 μg/mL of SARS-CoV-2 spike protein overnight at 4°C. Each sample was analyzed in duplicate, and the cutoff was set as the mean value of negative controls (healthy donor prepandemic serum specimens) plus 3 standard deviations.
Neutralizing antibodies were measured using vesicular stomatitis virus (VSV)-green fluorescent protein (GFP)-Spike SARS-CoV-2.32 (link) Serially diluted serum previously incubated with pseudovirus VSV-GFP-Spike SARS-CoV-2 was transferred into a Vero cell monolayer at a final multiplicity of infection of 0.5 and incubated at 37°C 5% CO2 for 18 to 20 hours. The infection was measured in each well by determining GFP fluorescence intensity using a Cytation3 plate reader (Agilent, Santa Clara, Calif). Half-maximal inhibitory concentration was calculated by nonlinear regression analysis.
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7

Quantifying TMAO and Glucose-Induced Albumin Uptake

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HK-2 cells were stimulated with TMAO (300 µM), low glucose (5 mM, unstimulated) or high glucose (30 mM) for 24 h at 37 °C in 5% CO2. After 24 h, 100 µg/mL human serum albumin-FITC (HSA-FITC, Jackson ImmunoResearch Europe Ltd., Cambridgeshire, UK) was added to the cells for 1 h at 37 °C. The cells were then washed with PBS 10 times and lysed with 0.1% SDS (in Milli-Q water). The lysate was transferred to a black 96-well plate and measured at 495 nm/519 nm using the Cytation 3 plate reader (BioTek, Winooski, VT, USA).
Cell viability was assessed by Pierce lactate dehydrogenase (LDH) cytotoxicity assay (Thermo fisher Scientific) following the manufacturer’s instructions [55 (link)].
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8

Quantifying Protein in Cell Membrane-Coated Nanoparticles

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The amount of protein present in the purified cell membrane material and cell membrane-coated NP was extracted using RIPA lysis buffer (phenylmethylsulfonyl fluoride, sodium orthovanadate, protease inhibitor cocktail, and 1x lysis buffer) and determined using a NanoOrange® Protein Quantification Kit. To extract the protein, cells were trypsinized and washed with ice cold PBS. RIPA lysis buffer was added to cells and CMCNP at a concentration of 1 ml/ 1×107 cells and 1 ml/mg CMCNP, respectively. Samples were agitated for 30 minutes at 4°C followed by a centrifugation at 19,802 ×g at 4°C. The supernatant was collected and stored at −80°C for further analysis. For quantification, samples were suspended in a 1x NanoOrange® working solution at 0.5 mg/ml. The samples were incubated at 90–93°C for 10 minutes and cooled to room temperature for 20 minutes under light protected conditions, then 200 μl of the samples were added to a 96 well plate. Fluorescence intensity of the samples was measured using Cytation 3 plate reader (BioTek, Winooski, VT, USA) at excitation and emission wavelength of 485 nm and 590 nm, respectively. Western blot analysis was performed on the purified cell membrane material and cell membrane-coated NP with primary antibodies against CD47 and anti-α tubulin as the loading control.
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9

Curcumin Nanoparticle Stability Evaluation

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Curcumin (CUR) and nanoparticle stability were evaluated using a Cytation 3 plate reader (BioTek, Winooski, VT, USA). NP and free CUR dissolved in DMSO (final DMSO concentration < 0.05 % v/v) were suspended in 1X PBS and RPMI media supplemented with 10% fetal bovine serum. 200 μl of 1 mg/ml NP solution was added to a 96 well plate. Fluorescence intensity (excitation/emission: 420/520) of the curcumin was recorded in every 30 minutes for 24 hours. Initial fluorescence intensity was considered as control, and the relative stability index was measured using the following equation:
Relativestabilityindex=InitialfluorescenceintensityFluorescenceintensityateachtimepoint
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10

Measuring β-galactosidase Activity and Plasmid Digestion

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We grew 5-mL LB+ampicillin cultures with DH5α carrying pACT1-lacZ or its R599A derivative to mid-log phase at 37˚, then added 8 µl of X-gal (20 mg/mL in DMSO) and 5 µl of chloramphenicol (Sigma-Aldrich # C0378, 34 mg/mL dissolved in ethanol). After time intervals of 0, 10, 20, 50, 100, 120, or 150 min, a 500-µl aliquot of cells was removed and pelleted, then resuspended in 250 µl of 50 mM Tris-HCl, 10 mM EDTA, pH 8.0, 100 µg/mL RNase A, followed by addition of 250 µl 200 mM sodium hydroxide, 1% SDS to lyse the cells. 100-µl aliquots of this lysate were transferred to the wells of a flat-bottom 96-well microplate. Absorbance at 615 nm was measured with a BioTek Cytation 3 plate reader. Plasmid was isolated from the remainder of the original 5-mL culture of the R599A culture using standard methods and digested with PvuI-HF (New England Biolabs #R3151) according to manufacturer’s instructions. Digested DNA was separated by 1% agarose gel electrophoresis in Tris-acetate EDTA buffer and visualized with ethidium bromide.
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