The largest database of trusted experimental protocols

9 protocols using ab254349

1

Quantifying Protein Expression via Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein was extracted using a radioimmunoprecipitation assay, and the bicinchoninic acid (Beyotime, Shanghai, China) method was employed to quantify the concentration. The protein sample was first electrophoresed for 2h; subsequently, the authors transferred the total protein onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). TBST containing 5% skim milk was used to block non-specific antigens for 1h following incubating with primary antibodies (caspase-3 [1:1,000, ab32351; Abcam], c-caspase-3 [1:1,000, ab32042; Abcam], CREB1 [1:1,000, ab32515; Abcam], p-CREB1 [1:1,000, ab32096; Abcam], Bcl-2 [1:1,000, ab182858; Abcam], PSD-95 [1:1,000, ab238135; Abcam], synaptophysin [1:1,000, ab32127; Abcam], synapsin [1:1,000, ab254349; Abcam], GAPDH [1:1,000, ab8245; Abcam], and β-actin [1:5,000, #A5441, Sigma]) at 4°C overnight. Membranes were washed with TBST three times and incubated with the secondary HRP-conjugated goat anti-rabbit IgG (1:5,000 dilution; cat. ab205719; Abcam). Subsequently, membranes were washed with TBST three times. Blots were then visualized using enhanced chemiluminescence (GE Healthcare Life Sciences, Little Chalfont, UK).
+ Open protocol
+ Expand
2

Immunofluorescence Staining of Neuronal Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed with 4% paraformaldehyde and then blocked in PBS containing 10% FBS and 0.1% Triton X-100 for 1 h at 37 °C. Primary antibodies against PSD95 (mouse monoclonal antibody, 1:100, catalog #: MAB1596, PMID: 25,498,153, Sigma-Aldrich, St.Louis, USA), Map2 (mouse monoclonal antibody, 1:500, catalog #: M9942, PMID: 26,903,822, Sigma‒Aldrich, St.Louis, USA; rabbit polyclonal antibody, 1:500, catalog #: ab32454, Abcam, Cambridge, UK) and synapsin-1 (rabbit monoclonal antibody, 1:100, catalog #: ab254349, PMID: 9,539,796, Abcam, Cambridge, UK) were incubated with the cells overnight at 4 °C. Then, appropriate fluorescent secondary antibodies (A-21,202, A-21,207 or A-21,206, Life Technologies, California, USA) diluted 1:1000 were incubated with the cells for 1 h at 37 °C in the dark. Following DAPI staining, the cells were mounted and analysed under confocal laser scanning microscopy (SP8, Leica, Wetzlar, Germany).
+ Open protocol
+ Expand
3

Comprehensive Immunohistochemical Analysis of Human Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry of human postmortem brain tissues was completed on 10‐µm thick paraffin sections fixed with 4% paraformaldehyde. The sections were blocked with 2% bovine serum albumin in PBS for 1 h at room temperature before applying the primary antibody overnight at 4 °C. The human brain sections were stained with anti‐NeuN (ab104224, Abcam, 1:200) for neurons, anti‐GFAP (ab4648, Abcam, 1:200) for astrocytes, and anti‐PSAP (10801‐1‐AP, Proteintech, 1:200). For proliferation experiments, sections were stained with anti‐Ki67 (ab15580, Abcam, 1:200) and EdU (C10310‐3, Cell‐light EdU Apollo488, Ribobio). To study neuronal morphology, staining was performed with anti‐MAP2 (ab254143, Abcam, 1:200). To quantify the synaptic count in neurons, cells were stained with anti‐Synapsin I (ab254349, Abcam, 1:200) and anti‐PSD95 (124011, Synaptic Systems, 1:200). Sections were washed three times for 5 min each at room temperature and incubated with DAPI(C0065, Solarbio) for 10 min. The sections were then incubated with the secondary antibodies (A32723 and A11037, ThermoFisher, 1:200) for 1 h at room temperature after incubation with primary antibodies. All sections were mounted on glass slides with fluorescent mounting medium (ZLI‐9556, ZSGB‐BIO).
+ Open protocol
+ Expand
4

Authentication and Quantification of RC

Check if the same lab product or an alternative is used in the 5 most similar protocols
RC (batch number, 1711028050) was purchased from Anhui Huizhongzhou TCM Pieces Co., Ltd. (Anhui, China) and authenticated by Prof. Qi-nan Wu (College of Pharmacy, Nanjing University of Chinese Medicine, Nanjing, China). Voucher specimens were deposited at the Museum of Materia Medica, Nanjing University of Chinese Medicine. Diazepam (DZP) was purchased from Huazhong Pharmaceutical Co., Ltd. (Hubei, China). LPS (from Escherichia coli, serotype 0111: B4) and pentobarbital sodium were from Sigma-Aldrich (St. Louis, MO, USA). Radioimmunoassay (RIA) kits for 5-HT (20210202), DA (20210129), IL-1β (20210201), TNF-α (20200130), IL-10 (20200201), and IL-4 (20200203) were purchased from Beijing Sino-UK Institute of Biological Technology (Beijing, China). Two primary antibodies were used in the study: rabbit anti-NeuN (Abcam, ab236870, 1:40000) and rabbit anti-Syn I (Abcam, ab254349, 1:10000).
+ Open protocol
+ Expand
5

Synaptic Protein Changes After Sub-FS Stimuli

Check if the same lab product or an alternative is used in the 5 most similar protocols
At 3 days, 2 weeks, and 2 months after sub-FS stimuli, rats were anesthetized and decapitated. Brains were quickly removed to separate the hippocampus and cortex on ice. After measuring protein content using a BCA Protein Assay Kit (P0012; Beyotime), proteins were separated using 10% and 12% SDS-PAGE gel (P0012AC; Beyotime) and transferred to a polyvinylidene fluoride membrane (220 mA, 60 or 100 min, respectively). Subsequently, these membranes were blocked with 5% skim milk for 3 h. After incubation with the primary antibodies anti-synapsin I (1:1 000; ab254349; Abcam), anti-PSD95 (1:1 000; ab2723; Abcam), anti-VGLUT1 (1:1 000; ab227805; Abcam), anti-TGF-β1 (1:1 000; ab179695; Abcam), anti-TSP-1 (1:1 000; A00667-1; Boster), anti-caspase-3 (1:1 000; 9662; Cell Signaling Technology), anti-cleaved caspase-3 (1:1 000; ab2302; Abcam), or glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 1:1 000; AB-P-R-001; Goodhere) overnight at 4°C, and the horseradish peroxidase-conjugated secondary antibody (1:3 000; ZB-2301 and ZB-2305; Beijing Zhongshan) for 2 h at 37°C, the membranes were exposed (ImageQuant LAS 500, USA). Gel bands were analyzed using ImageJ (version 1.49; National Institutes of Health; United States) software and are presented as ratios to GAPDH.
+ Open protocol
+ Expand
6

Immunocytochemistry for Neural Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were washed three times with sterile PBS and then fixed using 4% PFA for 20 min. After washing, cells were blocked 0.3% Triton-X and 1% goat serum in PBS for 1 h. Primary antibodies specific for Synapsin1 (1:500; ab254349; Rabbit; Abcam, Cambridge, MA, USA), NeuN (1:500; ab104225; Rabbit; Abcam, Cambridge, MA, USA), Beta-III Tubulin (1:500; MAB1637, Mouse; Kenilworth, NJ, USA), MAP2 (1:1000; Chicken; ab5392; Abcam, Cambridge, MA, USA), TBR1 (1:200; ab183032; Rabbit; Abcam, Cambridge, MA, USA), GFAP (1:500; ab4674; Chicken; Abcam, Cambridge, MA, USA), and Ki67 (1:500; ab245113; Mouse; Abcam, Cambridge, MA, USA) were incubated overnight. After washing, secondary antibodies (chicken 555, rabbit 488, mouse 647; Abcam, Cambridge, MA, USA) were incubated for 2 h. This was followed by 10 min of DAPI Staining Solution in PBS (1:1000, ab228549, Abcam, Cambridge, MA, USA) after which point slides were cover-slipped with ProLong Gold Antifade Mountant (Thermo Fisher Scientific, Waltham, MA, USA) mounting media and allowed to dry for 48 h.
+ Open protocol
+ Expand
7

Identification of hiPSC-Derived Cardiac and Neuronal Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Induced cardiomyocytes and sympathetic neurons from hiPSC were dissociated and seeded on FluoroDish tissue culture dishes at desirable density for subsequent confocal imaging. Two to five days after seeding, cells were fixed with 4% formaldehyde, permeabilized and blocked in Tris-buffered saline (TBS) plus 0.5% Triton and 6% donkey serum. hiPSC-CM were then incubated in TBS with primary antibodies, anti-α-actinin (Sigma, A7811) and anti-cardiac troponin T (anti-cTnT, Abcam, ab45932), overnight at 4°C. For hiPSC-SN, anti-tyrosine hydroxylase (anti-TH, Sigma, T2928), anti-peripherin (anti-PRPH, Sigma, AB1530) and anti-Synapsin (anti-Syn, Abcam, ab254349) were used. Then secondary antibodies conjugated to Alexa Fluor (488 and 594) were applied at room temperature for 2 h. Cell nuclei were stained by Hoechst (Invitrogen, H3570) for 10 min. Images were taken by Leica confocal microscope (Leica TCS SP5) and analysed with LAS X software.
+ Open protocol
+ Expand
8

Immunostaining of Brain Tissue Slices

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunostaining, brains were sliced into 50 μm coronal slices by a vibration microtome (Leica, VT1000 S). The brain slices were washed in PBS three times at room temperature, blocked with 5% (wt/vol) BSA (bovine serum albumin) containing 0.3% Triton-X-100 (vol/vol) in 0.01 M PBS for 1.5 h at room temperature and then incubated with primary antibodies for 24 h at 4 °C. The following primary antibodies were used: anti-PV (1:500, mouse, Millipore, MAB1572), anti-synaptophysin (1:200, mouse, Abcam, ab8049), anti-synapsin (1:500, rabbit, Abcam, ab254349), anti-SV2 (1:500, rabbit, Abcam, ab32942), anti-SNAP-25 (1:100, rabbit, Abcam, ab108990), anti-syntaxin (1:100, rabbit, Abcam, ab272736), anti-beta amyloid (1:800, mouse, Abcam, ab126649), and anti-GFP (1:500 rabbit, Abcam, ab290). Then, the sections were washed in PBS four times for 15 min and incubated with the corresponding secondary antibodies for 1.5 h at room temperature. All antibodies were diluted in the same block solution.
+ Open protocol
+ Expand
9

Hippocampal Protein Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Each gram of hippocampi were homogenized with 30 µl cocktail protease inhibitor (Roche Molecular Biochemicals, Germany) and 3 ml RIPA buffer (US Biological, USA). After centrifugation at 12000 rpm (4 •C), the supernatant was collected and stored at -20 •C. BCA assay and spectrophotometry were used to assess the total protein concentration. The supernatant sample (50µg of protein) was separated by 10% SDS-PAGE and transferred to PVDF membrane (Millipore Inc., Darmstadt, Germany). After blocking with 5% skim milk for 2 hours, the membrane was incubated with primary antibody overnight: Rac1 (1:500, sc-514583, Santa Cruz Biotechnology), Tiam1 (1:500, sc-393315, Santa Cruz Biotechnology), α-chimaerin (1:500, sc-365985, Santa Cruz Biotechnology), Bcr (1:500, sc-104, Santa Cruz Biotechnology), GluR-1 (1:500, sc-13152, Santa Cruz Biotechnology), Synapsin 1(1:500, ab254349, Abcam), and PSD-95 (1:500, sc-32290, Santa Cruz Biotechnology). The speci city of these primary antibodies has been veri ed (Mao et Tsai et al. 2012 (link)). The membrane was incubated with a mixture of anti-rabbit IgG (Golden Bridge, Zhongshan, China) and horseradish peroxidase (HRP) for 1 hour at room temperature. Quantity One software (Bio-Rad, USA) was used for quantitative analysis.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!