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2 protocols using ab205016

1

Antibody Analysis in Immunoblotting and Immunostaining

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Antibodies used for western blot analysis or immunostaining were as follows: mouse anti-FLAG M2 (F1804, Sigma), rabbit anti-PCIF1 (ab205016, Abcam), mouse anti-β actin (A5441, Sigma), anti-eIF4E (2067, Cell Signaling), anti-eIF4G (2498, Cell Signaling), rabbit anti-GAPDH (ab181602, Abcam), mouse anti-TRIM28 (ab22553, Abcam), rabbit anti-ATF5 (ab60126, Abcam), rabbit anti-EEF2 (ab33523), mouse anti-RACK1 (B-3, Santa Cruz), rabbit anti-PARP1 (9542, Cell Signaling), rabbit anti-HSPA8 (8444, Cell Signaling), mouse anti-HSP70/72 (C92F3A-5, Enzo Life Sciences). For m6A individual-nucleotide-resolution cross-linking and immunoprecipitation (miCLIP), rabbit anti-m6A (ab151230, Abcam) was used.
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2

CD8 T cell activation and PCIF1 knockdown

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Cells were cultured in 5% CO2, 37°C. CD8 T cells were purified from mouse lymph nodes using an easySep CD8 kit (Stemcell Technologies) and activated on plate-bound anti-CD3 (clone 145–2C11; Biolegend) and anti-CD28 (clone 37.51; Biolegend) antibodies in RPMI medium (Gibco/Thermofisher) with 20 ng ml−1 interleukin 2 (Novartis), 10% fetal calf serum (FCS) (Gibco/Thermofisher), 50 mM 2-mercaptoethanol (Sigma) and PenStrep (Thermofisher) for 5 days. Hela cells were grown in DMEM (Gibco/Thermofisher) with 10% FCS and 5 U ml−1 penicillin-streptomycin (ThermoFisher). PCIF1-directed siRNA smartpool or scrambled siRNA (Dharmacon) was transfected using a Neon transfection system (Thermofisher) using 1005 V × 35 ms × 2. CAPAM knockdown was confirmed by western blotting with anti-PCIF1 (ab205016; Abcam) and anti-actin (ab3280; Abcam) antibodies. RNA was prepared from cells as per the tissue samples, with the exception that cells were directly lysed in Tri-Reagent rather than frozen and ground.
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