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21 protocols using vancomycin hydrochloride

1

Bacterial Strain Culturing Protocols

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Bacterial strains used in this study are presented in Tables 1 and 2. Mueller-Hinton broth (MHB) was purchased from Sigma-Aldrich while Trypticase soy broth (TSB), Trypticase soy agar (TSA), and mannitol salt agar (MSA) were purchased from Becton, Dickinson and Company (Cockeysville, MD). Auranofin (Enzo Life Sciences), vancomycin hydrochloride (Gold Biotechnology) and linezolid (Selleck Chemicals) were all purchased from commercial vendors.
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2

Antibiotic Cocktail for Microbiome Manipulation

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For C57BL/6 mice, a combination of 1.22 g/liter of metronidazole (Acros Organics), 0.22 g/liter of ciprofloxacin (Sigma-Adrich), and 0.725 g/liter of vancomycin hydrochloride (Goldbio) was dissolved in the drinking water and administered 2 weeks before SD and during the 10 days of the SD session. For 2D2 mice, sulfamethoxazole (MP Biomedicals) and trimethoprim (Cayman Chemical) (68 (link)), 80 mg/kg of body weight per day (0.25 mg/ml), were dissolved in the drinking water and were administered 2 weeks before the experiment and during the 5 weeks of SD sessions.
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3

Antimicrobial Evaluation of Vancomycin, Auranofin, and Linezolid

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Auranofin, linezolid (Chem-Impex International, Wood Dale, IL, USA) and vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO, USA) were purchased from commercial vendors. Skim milk powder was purchased from Oxoid (Basingstoke, Hants, UK). Brain heart infusion (BHI), tryptic soy broth (TSB), Tryptic soy agar (TSA) and enterococcosel agar were purchased from Becton, Dickinson and Company (Cockeysville, MD, USA) and phosphate-buffered saline (PBS) was purchased from Corning (Manassas, VA, USA). Egg yolk emulsion was purchased from HIMEDIA Laboratories (Thane, MH, India). Defibrinated horse blood was obtained from Hemostat Laboratories (Dixon, CA, USA). Clinical isolates of VRE (Table S1) were obtained from the Biodefense and Emerging Infections Research Resources Repository (BEI Resources) and the American Type Culture Collection (ATCC).
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Evaluating Antimicrobial Agents against Staphylococcus

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Staphylococcus strains used in this study are presented in Table 1. Mueller-Hinton broth (MHB) was purchased from Sigma-Aldrich. Trypticase soy broth (TSB), Trypticase soy agar (TSA), and Mannitol salt agar (MSA) were purchased from Becton, Dickinson (Cockeysville, MD). Ebselen was purchased from (Adipogen corp, San Diego), vancomycin hydrochloride (Gold Biotechnology), linezolid (Selleck Chemicals), mupirocin (applichem, NE), and chloramphenicol (Sigma-Aldrich)
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5

Antimicrobial Susceptibility Testing Protocol

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The bacterial strains used in this study are presented in Tables 13. Müller–Hinton Broth (MHB) was purchased from Sigma–Aldrich. Trypticase soy broth (TSB), trypticase soy agar (TSA), and mannitol salt agar (MSA) were purchased from Becton, Dickinson (Cockeysville, MD, USA). Celecoxib was purchased from TSZ chemicals. Vancomycin hydrochloride was obtained from Gold Biotechnology; linezolid from Selleck Chemicals, mupirocin from Aapplichem, NE, clindamycin from TCI Chemicals, and fusidic acid and rifampicin from Sigma–Aldrich.
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6

Repositioning Compound Library Evaluation

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The Pharmakon 1600 repositioning compound library was purchased from
MicroSource Discovery Systems, Inc. (Gaylordsville, CT) and the Johns Hopkins
library was provided by Johns Hopkins University (Baltimore, MD). Both libraries
were supplied in 96-well plates of 10 mM stocks of the compounds in either
dimethyl sulfoxide or water and stored in −80° C. Ornidazole,
miconazole nitrate, econazole nitrate, tioconazole, butoconazole, clotrimazole,
metoprolol tartrate, metoclopramide hydrochloride, chloroquine diphosphate,
miconazole, dimetridazole, nithiamide and methylthiouracil (Alfa Aesar, Ward
Hill, MA), dichlorophen, triclabendazole, closantel, nitazoxanide (Ark Pharm
Inc, Libertyville, IL), ronidazole, oxyclozanide (Sigma-Aldrich, St. Louis, MO),
tinidazole (TCI, Portland, OR) and niclosamide (Cayman Chemical, Ann Arbor, MI)
were all purchased separately to confirm the results of both libraries.
Vancomycin hydrochloride (Gold Biotechnology, Olivette, MO) and metronidazole
(BTC, Hudson, NH) were used as positive controls.
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7

Vancomycin-resistant Enterococci Strain Cultivation

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Vancomycin-resistant Enterococci (VRE) strains (Table 1) were obtained from the American type culture collection (ATCC) and Biodefense and Emerging Infections Research Resources Repository (BEI Resources). All experiments were carried out in accordance with relevant guidelines and regulations and were approved by the Institutional Biosafety Committee of Purdue University. All chemicals and reagents were purchased from commercial vendors. Auranofin, linezolid (Chem-impex International, Wood Dale, IL), ampicillin (Peosta, IA), vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO), gentamicin sulfate (Fisher Bioreagents, Fairlawn, NJ), and ramoplanin (Sigma-Aldrich, St. Louis, MO) were purchased commercially. Brain heart infusion (BHI), tryptic soya broth (TSB), tryptic soya agar (TSA) and enterococcosel broth were purchased from BD (Becton, Dickinson and Company, Cockeysville, MD) and Phosphate buffered saline (PBS) was purchased from corning (Corning, NY).
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8

Vancomycin-Resistant Enterococcus Isolation

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Clinical isolates of vancomycin-resistant E. faecium and E. faecalis (Table 1) were obtained from the Biodefense and Emerging Infections Research Resources Repository (BEI Resources) and American Type Culture Collection (ATCC). Ampicillin (IBI Scientific, Peosta, IA, USA), closantel (Ark Pharm, Libertyville, IL, USA), gentamicin sulfate (Fisher Bioreagents, Fairlawn, NJ, USA), linezolid (Chem-Impex International Inc., Wood Dale, IL, USA), niclosamide (Cayman Chemicals, Ann Arbor, MI, USA), oxyclozanide (Sigma-Aldrich, St. Louis, MO, USA), rafoxanide (TCI America, Portland, OR, USA), ramoplanin (Sigma-Aldrich, St. Louis, MO, USA), and vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO, USA) were purchased from commercial vendors. Brain heart infusion (BHI), Tryptic soy broth (TSB), Tryptic soy agar (TSA) and enterococcosel agar were purchased from Becton, Dickinson and Company (Cockeysville, MD, USA). Phosphate buffered saline (PBS) was purchased from Corning (Manassas, VA, USA).
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9

Antibiotic Susceptibility Testing of Bacterial Isolates

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Bacterial isolates (Table 1) were obtained from the American Type Culture Collection (ATCC) and Biodefense and Emerging Infections Research Resources Repository (BEI Resources). Ebselen (Ark pharma, Arlington Heights, IL), linezolid (Chem-impex International, Wood Dale, IL), ampicillin (Peosta, IA), vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO), gentamicin sulfate (Fisher Bioreagents, Fairlawn, NJ) and ramoplanin (Sigma-Aldrich, St. Louis, MO) were purchased from commercial vendors. Brain heart infusion (BHI), tryptic soya broth (TSB), tryptic soya agar (TSA) and enterococcosel broth were purchased from BD (Becton, Dickinson and Company, Cockeysville, MD) and phosphate-buffered saline (PBS) was purchased from Corning (Corning, NY).
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10

Antimicrobial Agents and Bacterial Strains

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The bacterial strains used in this study are presented in Table 1. Auranofin (Enzo Life Sciences, Farmingdale, NY), mupirocin (AppliChem, Maryland Heights, MO), clindamycin (Sigma-Aldrich, St Louis, MO), vancomycin hydrochloride (Gold Biotechnology, St Louis, MO), linezolid (Selleck Chemicals, Houston, TX), retapamulin (Oxchem Corporation, Irwindale, CA), crystal violet (Sigma-Aldrich), 95% ethanol (Fisher Scientific, Pittsburgh, PA), MTS assay reagent (Promega Corp., Madison, WI), dimethyl sulphoxide (DMSO) and fusidic acid (Sigma-Aldrich) were all purchased from commercial vendors. Mueller–Hinton broth was purchased from Sigma-Aldrich, and trypticase soy broth (TSB), trypticase soy agar (TSA) and mannitol salt agar (MSA) were purchased from Becton Dickinson & Co. (Cockeysville, MD).
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