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26 protocols using cleaved il 1β

1

Quantitative Analysis of Skin Inflammasome

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Protein from human and rodent skin was extracted in RIPA buffer containing phosphatases and proteases inhibitor cocktails (Roche). Protein concentrations were determined by the BCA protein assay kit (Pierce, Mississauga, ON, Canada). Proteins were resolved by SDS-PAGE followed by western blotting using the following antibodies at 1:1000 concentration: Caspase-1 (Cell Signaling, MA), cleaved Caspase-1 (Cell Signaling, MA), IL1β (Cell Signaling, MA), cleaved IL1β (Cell Signaling, MA), and GAPDH (Cell Signaling, MA). Species appropriate secondary antibodies conjugated to horseradish peroxidase (BioRad, Mississauga, ON, Canada) were used and proteins visualized by enhanced chemiluminescence using the BioRad ChemiDoc MP Imaging System. Band intensities were detected, normalized and quantified with the ChemiDoc and Image Lab 5.0 software (BioRad Laboratories, Hercules, CA). Antibody concentrations are expressed relative to GAPDH.
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2

Myocardial Infarction Inflammation Markers

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Samples were obtained from the border zone either at day 3 in Experiment 1 or 1 hour in Experiment 2 after MI. Antibodies to p65 NF‐κB (Santa Cruz Biotechnology), NLRP3 (Santa‐Cruz Biotechnology, sc‐34408), cleaved IL‐1β (Cell Signaling Technology) and β‐actin (Santa Cruz Biotechnology) were used. Western blotting procedures were described previously.11 Experiments were replicated three times and results expressed as the mean value.
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3

Protein Analysis of Lung Adenocarcinoma

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Total proteins of lung adenocarcinoma cells were extracted using ice-cold RIPA lysis buffer, separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes. After blocking with protein-less rapid blocking fluid for 15 min, the membranes were then incubated overnight with primary antibodies listed as follows: TRAF3 (#4729, Cell Signaling Technology, Danvers, MA, USA), IL-1β(#12,703, Cell Signaling Technology), cleaved IL-1β(#83,186, Cell Signaling Technology), GAPDH (#5174, Cell Signaling Technology), Anti-pro Caspase-1 + p10 + p12 (ab179515, Cambridge, MA, USA), Anti-TMS1/ASC (ab151700, Cambridge). Subsequently, membranes were incubated with horseradish peroxidase-conjugated goat anti-rabbit immunoglobulin IgG for 2 h at room temperature. Finally, the relative band intensity was quantified using Image J software and normalized against GAPDH.
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4

Antibody-based Caspase-1 Activation Assay

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Antibodies against IL-1β and cleaved IL-1β were purchased from Cell Signaling Technology (Danvers, MA, USA). Caspase-1 and cleaved Caspase-1 (p20) were purchased from Abcam (Cambridge, UK).
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5

Western Blotting Analysis of Cell Death

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Western blotting was performed as described previously (Mohammed et al., 2021 (link)). Images were taken using a Chemidoc imager (Bio‐Rad) and quantified using ImageJ software (U.S. National Institutes of Health). Primary antibodies against the following proteins were used: phospho(S345) MLKL, phospho(T231+ S232)‐RIPK3, HMGB1 and TNFα from Abcam; RIPK1 and RIPK3 from Novus Biologicals; MLKL from Millipore Sigma; Phospho (Ser166)‐RIPK1, Cleaved Caspase‐3, Caspase 3 and Cleaved IL‐1β from Cell Signaling Technology (Danvers, MA); desmin from ThermoFisher Scientific; GAPDH, β‐tubulin and β‐actin were from Sigma‐Aldrich. HRP‐linked anti‐rabbit IgG, HRP‐linked anti‐mouse IgG and HRP‐linked anti‐rat IgG from Cell Signaling Technology (Danvers, MA) were used as secondary antibodies.
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6

Western Blot Analysis of Exosome Proteins

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Exosomes or cells were lysed with RIPA buffer containing a complete protease inhibitor tablet (Roche). Proteins were separated by SDS-PAGE gel and transferred onto polyvinylidene difluoride membranes. After blocked in 5% skim milk for 30 min, membranes were probed with various primary antibodies overnight at 4 °C, followed by incubation with horseradish peroxidase–linked secondary antibodies for 1 h at room temperature, and visualized with electrochemiluminescence by the chemiluminescence instrument. The following antibodies were used: TRIM59 (Invitrogen, Cat: PA5–38726), ABHD5 (Invitrogen, Cat: PA5–78704), CD63 (Invitrogen, Cat: 10628D), CD81 (Invitrogen, Cat: 16–0811-82), TSG101 (Invitrogen, Cat: PA5–82236), SLC16A4(MCT4) (Invitrogen, Cat: PA5–80008), β-actin (Cell Signaling Technology, Cat: #3700), HA-Tag (Cell Signaling Technology, Cat: #3724), Myc-Tag (Cell Signaling Technology, Cat: #2276), IL-1β (Cell Signaling Technology, Cat:#12703), Cleaved-IL-1β (Cell Signaling Technology, Cat: #83186), Caspase-1(Cell Signaling Technology, Cat: #3866), and Cleaved Caspase-1 (Cell Signaling Technology, Cat: #89332).
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7

Western Blot Analysis of Cellular Signaling

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The cultured cells or skin tissues were lysed in RIPA lysis buffer with protease and phosphatase inhibitors. The protein concentration was quantified by bicinchoninic acid (BCA) assay (Boster, California, United States). The protein samples were resolved by 10% SDS-PAGE gels and then transferred to PVDF membranes (Merck Millipore Ltd., Tullagreen, Carrigtwohill, County Cork, Ireland). After blocking in 5% bovine albumin (BSA) for 1 h, membranes were incubated with primary antibodies at against STAT3 (1:1,000, A1192, ABclonal), p-STAT3-Y705 (1:1,000, AP0705, ABclonal), ERK1/ERK2 (1:1,000, A16686, ABclonal), p-ERK1-T202/Y204 + ERK2-T185/Y187 (1:1,000, AP0472, ABclonal), PCNA (1:1,000, A0264, ABclonal), Cyclin D1 (1:1,000, 2922S, Cell Signaling Technology) Cleaved IL-1β (1:1,000, Cell Signaling Technology), IL-17A (1:1,000, A0688, ABclonal), ANGPTL4 (1:1,000, CSB-PA005044, Cusabio), ANGPTL4 (1:500, AF3485, R&D Systems), GAPDH (1:5,000, CSB-MA000071M2m, Cusabio) at 4°C overnight. The membranes were then incubated with HRP-conjugated anti-rabbit/mouse IgG (111-035-003/115-035-003, Jackson ImmunoResearch, West Grove, United States) secondary antibodies for 1 h at room temperature. Images were visualized on Tanon-5200 Chemiluminescent Imaging System (Tanon Science & Technology).
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8

Quantitative Protein Analysis in Membranes

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Protein concentration was determined by the BCA protein assay [43 (link)]. Membranes were exposed to the following antibodies purchased from Cell Signaling Technology: Occludin (#91131), Claudin-2 (#48120), Cleaved-IL-1β (#63124), IL-18 (#57058), Caspase-1 (#2225), NLRP3 (#15101), ASC/TMS1 (#67824), AIM2(#63660), β-actin (#4970), Malt1(#2494), Bcl10(#4237), Nod1(#3545), Card9 (#12283), Ripk2 (#4142). Anti-ZO-1 antibody purchased from abcam (ab221547), Anti-NLRC4 antibody purchased from ECM Bioscience(#NP5381). Western blotting signals were quantified by a FluorChem densitometer (Alpha Innotech, San Leandro, CA).
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9

Western Blot Analysis of Inflammasome Proteins

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Cells used for Western blotting were stimulated in FBS-free media. Cells were lysed in RIPA lysis buffer (Merck Millipore, Burlington, MA), and the protein concentrations were measured using the Micro BCA™ Protein Assay (Thermo Scientific). The proteins were separated in 8-16% stain-free TGX gels (Bio-Rad, Hercules, CA), transferred to PVDF membranes (iBlot® 2 PVDF regular stacks, Invitrogen, Carlsbad, CA), and analysed by immunoblotting. The primary antibodies used were cleaved IL-1β (1 : 1000 Cell Signaling Technologies, Danvers, MA. cat.nr:12242), IL-18 (1 : 1000 Abcam, Cambridge, UK. cat.nr: EPR19954-188), and caspase-1 p20 (1 : 750 Adipogen Life Sciences, cat.nr:AG-20B-0048-C100). Secondary antibodies used were goat anti mouse (1 : 5000 Abcam cat.nr: Ab6789), rabbit anti goat (1 : 2000 Dako, Agilent. Santa Clara, CA. cat.nr: P0160), and goat anti-rabbit (1 : 3000 Invitrogen cat.nr: A11034). Membranes were washed in TBST buffer and analysed with ChemiDoc™ MP Imaging System (Bio-Rad).
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10

Immunofluorescent Staining of Paraffin-Embedded Tissue

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Immunofluorescent staining was performed according to the protocol of 'Immunofluorescent Staining of Paraffin-Embedded Tissue (Novus Biologicals)'. The information of antibodies is shown as follows: cleaved IL-1β (Cell Signaling), Caspase-3 (Santa Cruz), Phospho-p70s6k (Cell Signaling), Phospho-EIF2α (Cell Signaling), EIF3A (Cell Signaling), vWF (Abcam), VCAM-1 (Cell Signaling) and p22phox (Cell Signaling).
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