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7 protocols using g44 26

1

Multiparametric Flow Cytometry Profiling

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Flow cytometry and cell sorting were performed using a S3e Cell Sorter (BioRad, Hercules, CA). Cells were labeled with APC-conjugated mouse anti-human CD44 (1:20; G44-26; BD, Franklin Lakes, NJ), APC-conjugated mouse anti-human EPCAM (1:20; EBA-1; BD), PE/Cy7-conjugated anti-human/mouse CD49f (ITGA6) (1:20; GoH3; Biolegend), PE/Cy7-conjugated anti-human CD24 (1:20; ML5; Biolegend), APC-conjugated human anti-PROM1/CD133 (1:11; AC133; Miltenyi Biotech), APC-conjugated mouse anti-human CD26/DPP4 (1:11, FR10-11G9; Miltenyi Biotech), and FITC-conjugated mouse anti-human CD90/THY1 antibodies. An APC-conjugated mouse IgG1, κ isotype control antibody (Biolegend, MOPC-21) and a PE-Cy7-conjugated mouse IgG2b, κ isotype control (BD, 27–35) were used as controls.
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2

Multicolor Flow Cytometry Immunophenotyping

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FITC-labeled antibodies to CD3 (SK7), CD14 (MϕP9), CD16 (NKP15), CD19 (4G7), and CD56 (NCAM16.2), PerCP-Cy5.5-labeled antibody to CD44 (G44-26), PE-labeled antibody to IL-5, and AF647-labeled antibodies to CD127 (HIL-7R-M21) and CRTH2 (BM16) were purchased from BD Biosciences (San Jose, CA). (See additional Methods descriptions in the Online Repository)
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3

CD44 and CD133 Flow Cytometry of Caco-2 Cells

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Anti-human CD44 (mouse, fluorescein-5-isothiocyanate (FITC)-conjugated; G44-26, BD Biosciences) and anti-human CD133 [mouse, phycoerythrin (PE)-conjugated; AC133, Miltenyi Biotech] antibodies were used for standard cell surface flow cytometry. Caco-2 cells were sorted using a FACSVantage SE flow cytometer (BD Biosciences) after staining with FITC-conjugated anti-CD44 and PE-conjugated anti-CD133 antibodies. Flow cytometry data were analyzed by CellQuest software (BD Biosciences).
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4

CD44 and E-Selectin Binding Assay

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MSCs were FUT6-modRNA transfected, FTVI exofucosylated, or untreated (control), and lysates were prepared in 2%NP40, 150mM NaCl, 50mM Tris-HCl (pH7.4), 20μg/mL PMSF, and 1x protease inhibitor cocktail (Roche). Cell lysates were precleared with protein G-agarose beads (Invitrogen). For CD44 immunoprecipitation, lysates were incubated with a cocktail of mouse anti-human CD44 monoclonal antibodies consisting of 2C5 (R&D Systems), F10-44.2 (Southern Biotech), 515 and G44-26 (both from BD Biosciences). For E-selectin pulldown, lysates were incubated with mouse E-Ig in the presence of 2mM CaCl2. CD44 immunoprecipitates and E-Ig pulldowns were collected with protein G-agarose beads and eluted via boiling in 1.5x reducing SDS-Sample Buffer, run on an SDS-PAGE gel, and Western Blotted with anti-CD44 antibodies 2C5, G44-26, and F10-44.2, or the anti-sLex antibody HECA452.
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5

CD44 Immunoprecipitation and Western Blotting

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Lysates of KG1a and hMSCs were prepared as described above and precleared with protein G-agarose beads (Invitrogen). For CD44 immunoprecipitation, lysates were incubated with a cocktail of mouse anti-CD44 mAb consisting of 2C5 (R&D Systems), 515, and G44-26 (both from BD Biosciences). Immunoprecipitates were then collected with protein G-agarose beads and eluted via boiling in 1.5× reducing SDS-sample buffer. Proteins were then subjected to reducing 7.5 % SDS-PAGE and western blotting.
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6

Cell Surface Characterization by Flow Cytometry

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Standard cell surface flow cytometry was used to characterize Caco-2, HCT116, HT29, SW480, and DLD1 cells with FITC (fluorescein-5-isothiocyanate)-conjugated mouse anti-human CD44 (G44-26, BD Biosciences) and PE (phycoerythrin)-conjugated mouse anti-human CD133 (AC133, Miltenyi Biotech) antibodies. Cell sorting was performed using a FACSVantage SE flow cytometer (Becton Dickinson) with anti-CD44 and anti-CD133 antibodies. Data were analyzed with CellQuest software (Becton Dickinson).
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7

Sorting and Characterization of CD44 Subpopulations

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For sorting of CD44 high and CD44 low cells from spheroid cells, dissociated cells were filtered, incubated with DAPI for the exclusion of nonviable cells, and double-stained with a phycoerythrin (PE)-or allophycocyanin (APC)-conjugated monoclonal antibody against CD44 (G44-26; BD PharMingen). For evaluation of mTORC1 activation of CD44 high and CD44 low cells, the dissociated spheroid cells were double-stained with the conjugated anti-CD44 antibody and an anti-phospho (T37/46) 4EBP1 antibody (Cell Signaling Technology), followed by anti-rabbit IgG antibody conjugated with Alexa Fluor 488. For analyses of mouse xenograft tumors, additional staining with an APC-conjugated anti-human EpCAM antibody (BD Biosciences) was performed to select human epithelial tumor cells. To evaluate ROS levels, the cells were treated with the CellRox DeepRed reagent or H2DCFDA (Molecular Probes) according to the manufacturers' instructions. The stained cells were analyzed using the FACS Aria IIIu Cell Sorter (BD Biosciences) as previously described (Ohata et al., 2012) .
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