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16 protocols using methocult h4434 classic medium

1

Assessing PKCδ and ROCK1/2 in IFNα Anti-clonogenic Effects

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In the experiments to assess the role of PKCδ or ROCK1/2 on IFNα-mediated anti-clonogenic effects, primary PBMCs from PV patients were transfected with control or PKCδ (ON-TARGETplus Human PRKCD siRNA SMARTPool, # L-003524-00-0005, Dharmacon), or ROCK1 and ROCK2 siRNAs using TransIT-TKO Transfection Reagent (Mirus), as per the manufacturer’s instructions, as indicated. Hematopoietic progenitor colony formation for human erythroid precursors (burst-forming unit erythroid [BFU-E]) was then determined in clonogenic assays in MethoCult H4434 Classic medium (Stemcell Technologies) in the absence or presence of human IFNα (1000 IU/mL). In the experiments to assess the effects of drug-targeted inhibition of ROCK1/2 on IFNα-mediated anti-clonogenic effects, HEL cells were seeded in MethoCult H4534 Classic medium (Stemcell Technologies) and treated with vehicle-control (DMSO), GSK429286A (5 μM), and/or human IFNα (100 IU/mL). In parallel, primary PBMCs from PV patients were seeded in MethoCult H4434 Classic medium (Stemcell Technologies) and treated with vehicle-control (PBS), Fasudil (30 μM), and/or human IFNα (1000 IU/mL). Hematopoietic colony formations were scored as in previous studies21 (link),71 (link). Percent (%) of colony formation was calculated by dividing each colony count by the average colony count in the control group, and multiplying by 100%.
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2

Colony Formation Assay for Cell Cytotoxicity

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Colony formation assays in MethoCult™ were performed after a 4 hour cytolysis reaction with an E : T ratio of 10 : 1 PBMCs to target cells and 1 nM triplebody Her2-3-Her2 or 33-3-19. Colony Forming Cells (CFCs) were detected and counted using the MethoCult™ H4434 Classic medium (Stem Cell Technologies, Munich). Briefly, cells were harvested and washed with Iscove's Modified Dulbecco's Medium after the cytolysis reaction. 5,000 to 10,000 target cells were seeded to 1 mL of rigorously vortexed MethoCult™ medium and transferred to a 24-well tissue culture plate. The sample well was surrounded with water-containing wells and the dish was incubated at 37°C/5 % CO2 for 7 days. On day seven, 100 μL of a 1 mg/mL iodonitrotetrazolium chloride (INT) solution in PBS was added and after an overnight incubation at 37°C/5 % CO2 the number of colonies was counted.
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3

Puromycin-Selected Hematopoietic Colonies

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Cells were seeded into MethoCult H4434 Classic medium (StemCell Technologies) with the addition of 2.5 μg/ml puromycin. Cultures were incubated at 37 °C in a humidified atmosphere of 5% CO2. The colonies were replated every 7 days under the same conditions.
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4

Colony-Forming Cell Assay

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Clonogenic potential post-transduction was assessed by a colony-forming cell (CFC) assay and enumeration of individual CFUs compared to mock (untransduced) cells. Briefly, a 10× solution of cells was mixed with MethoCult H4434 Classic medium (StemCell Technologies) and dispensed into dishes using a syringe attached to a blunt-end needle. Plated cells were incubated for 10 days at 37°C/5% CO2, at which point the individual colonies (CFUs) were counted manually on an inverted microscope. A total of 1,000 cells per well were plated for each assay and each assay was performed in duplicate.
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5

Clonogenic Potential of HSPCs

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Clonogenic potential of human HSPCs was assessed in colony-forming unit (CFU) assays, 3000 (for healthy samples) or 5000 (for FA samples) HSPCs were plated per triplicate in human methylcellulose MethoCult H4434 Classic medium (04434, StemCell Technologies). The BET bromodomain inhibitor (+)-JQ1 was added to a final concentration of 50 nM and hematopoietic colonies were scored after 14 days of culture at 37°C and 5% CO2. Pictures were taken with the STEMvision System (StemCell Technologies).
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6

Myeloid and Erythroid Lineage Differentiation

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Isolated BM-MNC were aliquoted in duplicate in Methocult H4535 Enriched without EPO medium (Stem Cell Technologies, France) for induction of differentiation into the myeloid lineage (granulocyte/macrophage colony-forming units, GM-CFU), as well as in Methocult H4434 Classic medium (Stem Cell Technologies) for induction of differentiation into the erythroid lineage (erythroid burst-forming units, BFU-E). After incubation for 14 days, the number of GM-CFU and BFU-E was counted.
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7

Murine and human hematopoietic progenitor colony formation

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Bone marrow (BM) cells were collected from 5- to 7-week-old wild-type or Mettl14fl/flCreERT mice, and BM progenitor (i.e., lineage negative, Lin) cells were enriched with the Mouse Lineage Cell Depletion Kit (Miltenyi Biotec). BM progenitor cells were then co-transduced with different combinations of retroviruses or lentiviruses as indicated through two rounds of “spinoculation”. Cells were then plated into ColonyGEL methylcellulose medium (ReachBio, Seattle, WA) supplied with 10 ng/ml of murine recombinant IL-3, IL-6, GM-CSF and 30 ng/ml of murine recombinant SCF, along with 1.0 mg/ml of G418 (Gibco BRL, Gaithersburg, MD) and/or 2.5 µg/ml of puromycin (Sigma-Aldrich). Cultures were incubated at 37°C in a humidified atmosphere of 5% CO2 for 6 to 7 days. Serial replating was then performed by collecting colony cells and replated them in methylcellulose medium every 7 days. Colony numbers were counted and compared for each passage.
For CFA assays using human primary cells, CD34+ HSPCs transduced with lentivirus were seeded into MethoCult™ H4434 Classic medium (StemCell Technologies) with the addition of 2.5 µg/ml puromycin. Cultures were incubated at 37°C in a humidified atmosphere of 5% CO2 for 10 days before counting.
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8

Lentiviral Transduction and Colony Assay

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Cells were transduced with lentivirus and then at the density of 1000 cells/well seeded into MethoCult H4434 Classic medium (StemCell Technologies). After 10 days, cells were counted.
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9

Leukaemia Cell Colony-Forming Assays

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For colony-forming assays using human leukaemia cells, the transduced cells were seeded into MethoCult H4434 Classic medium (StemCell Technologies) with the addition of 2.5 µg ml−1 puromycin. Cultures were incubated at 37 °C in a humidified atmosphere of 5% CO2 for 10 days before counting.
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10

THP-1 Cell Differentiation Assay

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THP-1 cells (5 × 104) were transfected with LNP-Cas9 RNP/MSCM-NF. After 48 hours of incubation, cells were mixed with MethoCult H4434 Classic medium (STEMCELL Technologies) supplemented with GCSF (10 ng/ml) (PeproTech) and 1% P/S, and were dispensed into 35-mm dishes at 1 × 104 cells per plate. Plates were incubated at 37°C and colonies were counted after 14 days of culture.
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