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8 protocols using fluorescein isothiocyanate (fitc)

1

Nikon Epifluorescence Microscopy Protocol

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All optical imaging in this work was conducted using a Nikon Eclipse Ti microscope (Nikon, Japan) running the NIS Elements software (version 4.13.05, Nikon) with an Evolve electron-multiplying charge coupled device (EMCCD) (Teledyne Photometrics, Tucson, AZ) and epifluorescence source (Intensilight, Nikon). Filter cubes were used for fluorescent imaging: TRITC, FITC, AT-DAPI, and RICM (Nikon). A NIR filter cube (Chroma) was also used to reduce background due to the NIR source. Imaging was performed with 20, 40, or 100x objectives (Nikon).
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2

Fluorescent FYGL Labeling and Cellular Uptake

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To detect the absorption of FYGL in cells, FITC-labeled FYGL was prepared. FITC
(Yeasen Biotechnology) was dissolved in DMSO, and water-soluble FYGL was dissolved in Na2CO3/NaHCO3 buffer. FITC (1 mg/mL) was added into the FYGL solution (1 mg/mL) to form FITC-FYGL, and the mixture
was incubated in the dark at 4 °C for 12 h. Extensive dialysis
of the mixture was performed using 1 L of PBS in the dark until the
unreacted FITC was removed. Finally, FITC-FYGL was
obtained. The ultraviolet (UV) spectra of FITC, FYGL, and FITC-FYGL are shown in Figure S9. FITC has a maximum UV absorption at 495 nm, while FYGL is a proteoglycan and has a maximum UV absorption at
280 nm. It can be estimated that the ratio of FYGL and FITC in FITC-FYGL is 100:117 according to the
following equation:62 (link) where F and P represent FITC
and protein, and A denotes the absorbance. C2C12 myoblasts were seeded
at a density of 2 × 105 cells/well in six-well plates,
and fully differentiated myotubes were incubated with 100 μg/mL
FITC-FYGL for 4 h. DAPI (Beyotime, Shanghai, China)
and rhodamine phalloidin were used for nuclear and cytoskeleton staining,
respectively. The absorption of FITC-FYGL in C2C12
myotubes was observed under a laser confocal microscope (C2+; Nikon,
Tokyo, Japan).
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3

Characterization of Virus-Like Particles

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Purified VP1 IBs were characterized by confocal microscopy and scanning electron microscopy (SEM). To visualize VP1 IBs by confocal microscopy, FITC (Sigma) was conjugated at a molar ration 1:2 (protein/dye) following manuscript instructions. Samples of FITC-labeled VP1 IBs (FITC-VP1 IBs) were placed on a glass slide, fixed with a slide cover and observed with a Nikon A1 (Japan) confocal fluorescence microscope. For electron microscopy scanning, purified VP1 IBs were thoroughly washed in pure water and resuspended in ethanol. Samples were prepared on a gold-coated silicon and observed under a Hitachi scanning electron microscope (Japan, S-4700). IBs nanoparticle size distribution was obtained by measuring the diameter of 150 particles from SEM micrographs using the free software Image J.
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4

BODIPY Fluorescence Microscopy Protocol

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The BODIPY fluorescence properties were investigated by fluorescence microscopy with a Ti-U Eclipse inverted microscope (Nikon, Tokyo, Japan) equipped with DAPI (excitation at 360/40 nm and emission at 460/50 nm), FITC (excitation at 480/30 nm and emission at 535/40 nm), and G2A (excitation at 535/50 nm and emission > 590 nm) fluorescence filters (Nikon). The intensity of the fluorescence in each image was analyzed with Image J software version 1.53c (National Institutes of Health (NIH), Bethesda, MD, USA) [106 (link)] by quantifying the corrected total cell fluorescence (CTCF) = integrated density—(area of cell × background mean fluorescence) for each cell and by normalizing it against the respective non-treated control sample at 0 h [107 (link)]. The CTCFs were quantified for at least five cells per image, acquired in more than three random microscopic fields in triplicate for each cell line. All fluorescence studies were performed after replacing the cell culture medium with non-supplemented medium without phenol red (ThermoFisher Scientific).
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5

Fluorescent Labeling of OsRIP1 Protein

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OsRIP1 labelling with fluorescein isothiocyanate (FITC) (Sigma-Aldrich) was carried out as described previously (Chen et al., 2021 (link)). After incubation with OsRIP1-FITC at desired timepoints, PSB-D cells or BY-2 cells were washed with corresponding medium and observed under a fluorescence microscope (Nikon, Melville, NY, USA) with a filter set Ex488/Em525.
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6

Multimodal Single-Cell Imaging Protocol

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Microscopy was performed using a Nikon Eclipse Ti microscope (Tokyo, Japan) equipped with an EMCCD camera (Photometrics Inc. Huntington Beach, CA, USA) and a 100 x, NA 1.40, oil-immersion phase-contrast objective lens. An X-Cite 120 LED was the light source. Three band-pass filter cubes (FITC, DsRed, and C-FL CY5, all from Nikon Inc.) were used for spectral separation. In both FISH and protein fluorescence experiments, an exposure time of 20 ms was used for phase-contrast images. In FISH experiments, the DsRed filter and the C-FL CY5 filter were used to detect Quasar 570 (exposure time of 500 ms, with an electro-multiplier gain of 200 x) and Quasar 670 (exposure time of 300 ms, with an electro-multiplier gain of 100 x), respectively. In protein fluorescence experiments, the FITC and the DsRed filter cubes were used to detect GFP (exposure time of 500 ms, no electro-multiplication) and mCherry (exposure time of 300 ms, no electro-multiplication), respectively. The power of the LED light was carefully controlled so that no significant photobleaching was detected. Images were collected by an automated scanning function of the microscope with a built-in Perfect Focus System (PFS) and analyzed using the Nikon NIS-elements software package. On average, 3000 single cells per protein sample and 1000 single cells per FISH sample were collected and analyzed.
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7

Optical IR-LEGO for Non-Target Pollen Disruption

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An optical IR-LEGO system was used for the cell disruption of non-target pollen. An Eclipse Ti2-E microscope (Nikon) with an IR-LEGO-490 mini/E system (Sigma-Koki, Saitama, Japan) was used. An objective lens (CFI PlanApo λ 20×, NA = 0.75, WD = 1.0; Nikon) was used for IR laser focusing, irradiation of the target cells with the IR laser, and imaging of the samples. When the power of the IR laser source was set to 300 mW, the laser power delivered to the samples in the focal plane was 145 mW, as measured using a power meter (Coherent, Santa Clara, CA, USA). The irradiation exposure time for cell disruption of each pollen was set from 1 to 10 ms. Images were captured using a scientific CMOS camera (ORCA-Fusion BT C15440-20UP; Hamamatsu Photonics, Shizuoka, Japan). Bandpass filters used for autofluorescence of pollen grains included fluorescein isothiocyanate (FITC) for the FDA signal, Cy3 for tdTomato fluorescence, and cyan fluorescent protein (CFP) (Nikon). ImageJ software version 1.53j (https://imagej.nih.gov/ij/index.html) was used to generate and analyse the images.
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8

Wide-field Microscopy for Tissue Imaging

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Using a wide-field microscopy system, ECLIPSE Ni (Nikon, Tokyo, Japan) equipped with a DIC microscope and objectives (Nikon), Plan Apo λ × 10 [numerical aperture (NA) = 0.45], Plan Apo λ × 20 (NA = 0.75), and Plan Apo λ × 40 (NA = 0.95), fluorescence and DIC imaging were obtained. Filter sets of fluorescein isothiocyanate [excitation: 460–500 nm, dichroic mirror (DM): 505 nm, emission: 510–560 nm; Nikon] and TxRed (excitation: 540–580 nm, DM: 595 nm, emission: 600–660 nm; Nikon) were used for calcein and autofluorescence derived from soft tissue, respectively. Tiling fluorescence and DIC imaging were sequentially performed to acquire the entire, high-contrast view of the tissue sections using the Plan Apo λ × 10 objective (NA = 0.45). The frame size of a single scan was 1280 × 1024 pixels, with an 8-bit color depth and a pixel size of 0.64 μm. Image processing was performed using NIS-Elements AR imaging software (Nikon, Tokyo, Japan).
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