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8 protocols using 2 solution dab kit

1

Immunohistochemical Evaluation of E2A Expression

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Immunohistochemistry staining was performed as protocol previously described [21] . Briefly, after fixation with formalin, tissues were embedded with paraffin, cut, and mounted on slides. Then, slides were washed with xylene to deparaffinize, with graded ethanol to rehydrate, incubated with citrate buffer to retrieve antigen, and blocked with 3% H2O2 to inactivate endogenous peroxidase. Slides were incubated with E2A primary antibody (Santa Cruz Biotechnology, Texas, USA; 1∶200 dilution) at 4°C overnight, followed by incubation with horseradish peroxidase (HRP)-conjugated goat anti-rabbit secondary antibody (Santa Cruz) for 30 minutes at room temperature. Complex visualization was done with a 2-Solution DAB Kit (Invitrogen). Negative controls were obtained by replacing the E2A primary antibody with preimmune rabbit serum.
Slides were examined by two researchers (Huang and Quan) independently. Scoring criteria used were as previously described with minor modifications. Staining intensity was scored as 0 (no staining), 1 (weak staining), 2 (moderate staining), and 3 (strong staining); positive cells on each section were scored as 0 (less than 10%), 1 (10%-25%), 2 (26%–50%), and 3 (>50%). The final score was a product of scores of intensity and positive cell of each slide. Slides with score 0–3 were defined as low expression and 4–9 as high expression.
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2

Immunohistochemical Analysis of CRC Tumor Samples

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Fresh, matched CRC tissues and adjacent normal tissues used for biological analyses and organoid establishment were obtained from Jiangsu Province Hospital of Chinese Medicine (Nanjing, China). All patients gave written informed consent for participation in this study. The study on fresh clinical samples was approved by the ethics committee of Jiangsu Province Hospital of Chinese Medicine.
IHC was performed by Nanjing Microworld Biotechnology Co., Ltd. using paraffin-embedded, formalin-fixed tumor tissues removed from the tumor-bearing nude mice at the end of the study. Sections were incubated with antibodies specific for PRMT1 (Proteintech, 11279–1, 1:100), H4R3me2a (PTMBio, PTM667, 1:100), EGFR (Abcam, ab52894, 1:200), TNS4 (Abcam, ab99887, 1:200) and SMARCA4 (Abcam, ab110641, 1:100). Immunocomplexes were visualized using a 2-Solution DAB Kit (Invitrogen).
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3

Immunohistochemistry Staining Protocol

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IHC was performed on paraffin-embedded sections according to standard protocols. Briefly, tissues were fixed in 4% paraformaldehyde solution or 10% neutral-buffered formalin at room temperature overnight and paraffin-embedded following standard procedures. The sections were deparaffinized in xylene and hydrated with decreasing concentrations of ethanol (100, 90, 80, 75%) for 3 min each time and microwaved-heated in sodium citrate buffer for antigen retrieval. Then, the sections were blocked in 5% BSA and incubated with primary antibodies: anti-LDHA (1:100 dilution, Cell Signaling Technology, Inc., Danvers, MA, USA #3582), anti-CD33 (1:100 dilution, ProteinTech Group, Inc., Wuhan, China, #17425), anti-LOX-1 (1:200 dilution, ProteinTech Group, Inc., #11837), or anti-c-Rel (1:100 dilution, Santa Cruz Biotechnology, USA, #sc-6955), followed by incubation with horseradish peroxidase-conjugated goat anti-rabbit secondary antibody. Antibody binding was visualized using a 2-Solution DAB Kit (Invitrogen). The images were obtained with an inverted microscope (Olympus IX71, Japan). An H-score was calculated using the following formula: H-score = ∑ (PI × I) = (percentage of cells of weak intensity × 1) + (percentage of cells of moderate intensity × 2) + percentage of cells of strong intensity × 3). Here H-score was recorded as a continuous variable.
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4

Immunohistochemical and Immunofluorescence Analysis

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Tissue sections were incubated overnight with primary antibody at 4 °C after deparaffinization, rehydration in citrate buffer, and boiling in a water bath for 40 min, followed by incubation with horseradish peroxidase-conjugated goat anti-rabbit secondary antibody for 30–90 min at room temperature. Antibody binding was visualized using a 2-solution DAB kit (Invitrogen, 882,014). For the immunofluorescence analysis of cells, fluorescent secondary antibodies were added to cell cultures for 30–90 min. DAPI was used to identify nuclei. Images were obtained by laser-scanning confocal microscopy. IHC score from 0 to 3 was measured in this test.
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5

Immunohistochemical Tissue Analysis

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After fixation with formalin, tissues were embedded with paraffin, cut, and mounted on slides. Then, slides were washed with xylene to deparaffinize, with graded ethanol to rehydrate, incubated with citrate buffer to retrieve antigen and blocked with 3% H2O2 to inactivate endogenous peroxidase. Slides were incubated with primary antibody at 4°C overnight, followed by incubation with horseradish peroxidase (HRP)-conjugated goat anti-rabbit secondary antibody for 30 min at room temperature. Complex visualization was done with a 2-solution DAB Kit (Invitrogen). Contrast was applied with hematoxylin, and the slides were mounted in Canadian balsam and observed with a light microscope.
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6

Quantifying Lung Tumor MITF Expression

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In order to analyze the tumor development on the lung, we performed an immunohistochemical staining for microphthalmia-associated transcription factor (MITF), which is expressed in YUMM 1.7 melanoma cells (Figure S2). To do so, first, antigen retrieval was carried out in citrate buffer pH 6.0. Then, endogenous peroxidase and nonspecific proteins were blocked by incubating the samples for 40 min with 3% of H2O2 and 40 min with 3% FBS. Then, lung tissue slides were incubated overnight with a specific MIFT antibody (1:500 Thermo Fisher Scientific; Waltham, MA, USA). Next, sections were washed, and the secondary antibody was added. Finally, the antigen expression was revealed by a horseradish peroxidase (HRP)-conjugated streptavidin (Life Technologies) and 2-Solution DAB kit (Life Technologies) following the manufacturer’s instructions. Antigen expression levels were quantified by ImageJ software (NIH, Bethesda, MD, USA). Results were expressed as the mean percentage MITF positive area for each group (n = 12).
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7

Liver Tissue Immunohistochemical Analysis

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Liver tissue was analyzed for the expression of Ki-67 (ab16667; 1:100; Abcam, Cambridge, UK) and caspase-3 (ab4051; 1:100; Abcam) by immunohistology. Mice from group I and III were sacrificed and livers were collected for immunohistological analyses in 7 µm tissue sections by staining with specific antibodies. Additionally, the expression of α-smooth muscle actin (ASMA) (MCA5781GA; 1:100; AbD Serotec, Raeigh, NC, USA) was also quantified. Antigen retrieval was carried out in citrate buffer pH 6.0, then endogenous peroxidase and inspecific proteins were blocked by incubating for 40 min with 3% of H2O2 and 40 min with 3% FBS. Finally, liver tissue was incubated with specific antibodies and antigen expression was revealed by horseradish peroxidase (HRP)-conjugated streptavidin (Life Technologies) and 2-Solution DAB kit (Life Technologies) following the manufacturer's instructions. Antigen expression levels were quantified by ImageJ software (NIH, Bethesda, MD, USA). Results were expressed as the mean of at least 6 liver sections for each treatment.
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8

Quantifying Apoptosis, Proliferation, and Macrophage Infiltration in Liver Tissue

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The expression levels of the apoptotic marker caspase-3, the proliferation marker Ki67 antigen, and the grade of macrophage infiltration by F4/80 marker was analyzed in liver tissue sections by means of immunohistological analysis. To do so, after antigens were retrieved in liver tissue, endogenous peroxidase and unspecific binding were blocked with 3% H2O2 and 5% FBS, respectively. Then, tissue sections were incubated with either specific antibodies against caspase-3 (ab4051; 1:100; Abcam, Cambridge, UK), Ki67 (ab16667; 1:100; Abcam), or F4/80 (MCA497R; 1:100; AbD Serotec, Oxford, UK). Finally, tissue was incubated with the specific biotinylated secondary antibodies and the antigen expression was revealed by horseradish peroxidase (HRP)-conjugated streptavidin (Life technologies, Carlsbad, CA, USA) and 2-Solution DAB kit (Life technologies) following the manufacturer's instructions. Antigen expression levels were quantified by ImageJ software (NIH, Bethesda, MD, USA). Results were expressed as the mean positive area per tumor foci area in at least 6 liver sections for each treatment.
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