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3 protocols using high performance chemiluminescence film

1

Quantitative Western Blot Analysis of Neurotrophic Factors

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Western blots of NT-3, BDNF, and NGF were studied according to the method described in [18] . The rat cortex was homogenated and the protein content of the supernatant was estimated with an absorbance of 560 nm by using a bicinchoninic acid protein assay reagent kit (Pierce, Rockford, IL, USA). After electrophoresis and protein transfer to a polyvinylidene fluoride membrane, the membrane was stained with primary and secondary antibodies. After these procedures were complete, the membrane was reacted in a chemiluminescence reagent (Western LightningTM, Chemiluminescence Reagent Plus, PerkinElmer Life Sciences, Inc., MA, USA). It was then exposed to a high-performance chemiluminescence film (Amersham Biosciences, England, UK) to measure the optical intensity.
A fluorescence imaging system (Vilber Lourmat, France) was used to quantify the immunoreactivity and western blots according to the method described in [19] (link). The background optical intensity of the area near the examined cortical area and the immunoreactive band was measured. The optical intensity ratio of the ischemic cortex to that of the sham operation was determined after subtracting the background intensity. The means ± SDs of these values were calculated and were statistically compared at each time point between the 2 groups. Eight rats were included at each time point for the analysis.
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2

Phosphatidylcholine Extraction and Analysis

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Purified phosphatidylcholine from soybean lecithin (Phospholipon 90G, CAS-number 97281-47-5) was purchased from Lipoid (Ludwigshafen, Germany). Trizma base, HEPES, Tween 20, Triton X-100, sodium dodecyl sulfate (SDS), glycine, ammonium persulfate, aprotinin, phenylmethylsulfonyl fluoride (PMSF), sodium orthovanadate, 2-mercaptoethanol, Hoechst 33258, and BSA-fraction V were obtained from Sigma Chemical Co. (St. Louis, MO, USA). PVDF membranes, high performance chemiluminescence film, and enhanced chemiluminescence- (ECL-) Plus are from Amersham Biosciences (GE Healthcare, Piscataway, NY, USA). Mini-Protean apparatus for SDS-polyacrylamide electrophoresis, miniature transfer apparatus, acrylamide, bis-acrylamide, and TEMED were obtained from Bio-Rad Laboratories (Hercules, CA, USA). Anti-EGFR (1005) antibody and secondary antibodies conjugated with HRP were purchased from Santa Cruz Biotechnology Laboratories (Santa Cruz, CA, USA). Antibodies anti-phospho-mTOR Ser2448, anti-mTOR, anti-p44/42 MAP kinase (ERK 1/2), and anti-phospho-p44/42 MAP kinase Thr202/Tyr204 were from Cell Signaling Technology Inc. (Beverly, MA, USA). Cy3-conjugated secondary antibody against rabbit polyclonal immunoglobulins was from Jackson ImmunoResearch Laboratories, Inc. Bicinchoninic acid (BCA) protein assay kit was obtained from Thermo Scientific, Pierce Protein Research Products (Rockford, IL, USA).
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3

Apoptosis and Cell Cycle Pathway Analysis

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An amount of 3.5 mg of total RNA was used in a reverse transcription (RT) reaction with biotin-16-Dutp (Roche Diagnostics GmbH). RT reaction was performed using Ampolabelling LPR kit (SABioscience Corporation, Frederick, MD, USA). The labeled cDNA was incubated with GEArray-Q Series human apoptosis and cell cycle membranes (SuperArray, SABioscience) at 60 °C overnight. The membrane used in the present study contained 96 genes that were closely related to apoptosis and cell cycle pathways, in addition to positive control genes (glyceraldehydes-3-phosphate dehydrogenase, GAPDH, cyclophillin A, and β-actin). After being washed, the membrane was incubated with streptavidin-alkaline phosphatase and was finally exposed to CDP-Star chemiluminescent substrate (SuperArray). Signal detection was performed using a high Performance chemiluminescence film (Amersham Biosciences). Analysis of results was performed by GEArray Expression Analysis Suite software (http://geasuite.superarray.com). According to this analysis, transcriptional levels of genes showing fold change values of >1.50 or <0.66 were considered significantly modified.
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