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30 protocols using ab167161

1

Western Blotting Analysis of Inflammatory and Antioxidant Markers

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The following primary antibodies were employed (dilution): ZO1 (1:1000, ab96587, Abcam, USA), occludin (1:1000, ab167161, Abcam, USA), claudin-1 (1:1000, ab15098, Abcam, USA), IκBα (1:2000, 4812, Cell Signaling Technology, USA), p-IκBα (1:2000, 2859, Cell Signaling Technology, USA), NF-κB p65 (1:1000, ab16502, Abcam, USA), monocyte chemotactic protein-1 (MCP-1, 1:1000, ab7202; Abcam, USA), cyclooxygenase-2 (COX-2, 1:1000, ab62331; Abcam, USA), Keap1 (1:1000, ab139729, Abcam, USA), Nrf2 (1:1000, ab31163, Abcam, USA), heme oxygenase 1 (HO-1, 1:2000, ab68477, Abcam, USA), catalase (1:1000, ab52477, Abcam, USA), NAD(P)H quinone dehydrogenase 1 (NQO1, 1:1000, ab28947, Abcam, USA), α smooth muscle actin (α-SMA, 1:300, ab7817, Abcam, USA), collagen I (1:5000, ab34710, Abcam, USA), and fibronectin (1:1000, ab2413, Abcam, USA). Western blot analysis was performed as previously described24 (link),26 (link),27 (link). Blots were obtained with ECL reagent and protein concentrations were normalized by actin expression. Specific bands indicating target proteins were analyzed using ImageJ 1.48 v software.
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2

Western Blot Analysis of Tight Junction and Inflammatory Proteins

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Colon tissues were lysed in 1 mL RIPA lysis buffer containing 1 mM PMSF and 1% phosphatase inhibitor cocktail (Applygen Technologies Inc., Beijing, China). Protein concentrations were measured using a Pierce BCA protein assay kit (Thermo Fisher Scientific, Waltham, Massachusetts, USA). Samples (25–50 μg) were separated using 10% SDS–PAGE and then wet transferred to polyvinylidene difluoride membranes (PVDF, EMD Millipore, Burlington, USA). Membranes were blocked with 5% non-fat milk and incubated with primary antibodies against occludin (1:1000; ab167161, Abcam), claudin-1 (1:1000; ab180158, Abcam), ZO1 (1:1000; CST#13663,Cell Signaling Technologies, Darmstadt, Germany), TLR4 (1:500; sc-293072, Santa Cruz), NF-κB (1:1000; CST#8242, Cell Signaling Technologies), phosphorylated (p) NF-κB (1:1000; CST#8214, Cell Signaling Technologies), MyD88 (1:1000; ab2064, Abcam), or β-actin (1:1000; CST#4970, Cell Signaling Technologies) and incubated overnight at 4°C with gentle shaking. The membranes were washed three times and then incubated with a horseradish peroxidase–linked secondary antibody (1:1000; Beyotime, Jiangsu, China). Immunoreactivity was detected using an enhanced chemiluminescence reagent (WBKLS0500; EMD Millipore) and quantified using Image Lab 5.2.1 software (Bio-Rad, Hercules, CA, USA).
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3

Tight Junction Protein Expression Analysis

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The cells were digested by trypsin, lysed with enhanced radioimmunoprecipitation assay lysis buffer containing trypsin (Boster Biotech), and quantified using bicinchoninic acid kit (Boster Biotech). The proteins were separated by SDS-PAGE and transferred onto polyvinylidene fluoride membrane. The membrane was blocked in 5% bovine serum albumin for 2 h and then incubated at 4 °C overnight with diluted primary antibodies: rabbit anti-ZO-1 (ab216880, 1:1000, Abcam), anti-occludin (ab167161, 1:5000, Abcam), anti-TLR4 (ab13556, 1:500, Abcam), anti-NF-κB p65 (ab16502, 1:2000, Abcam), anti-NF-κB p65 (phospho S536, ab76302, 1:1000, Abcam), and anti-GAPDH (ab181602, 1:5000, Abcam). After incubation, horseradish peroxidase (or AF488) labeled anti-rabbit IgG (ab6721, or ab150117, 1:2000, Abcam) was added for another 1 h incubation at RT. The immunoblots were visualized with enhanced chemiluminescence reagents (EMD Millipore). The images were captured and analyzed by ImageJ 1.48u (Bio-Rad). GAPDH was served as the internal reference. All experiments were conducted independently in triplicate.
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4

Duodenal Tight Junction Protein Analysis

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A BCA assay was used to measure the concentration of total protein extracted from homogenized duodenum tissues. Western blot was performed following standard procedures. Briefly, 20μl denatured protein each well was loaded onto SDS-PAGE. After electrophoresis, the proteins were electroblotted to a PVDF membrane. Incubations of the primary and secondary antibodies were performed overnight at 4°C and for one hour at room temperature, respectively. Anti-Tight Junction Protein 1 (ZO-1) antibody (NBP1-85047) was purchased from Novus (Shanghai, China). Anti-Occludin (OCLN) (ab167161), anti-Claudin 3 (CLN3) (ab15102), anti-Desmocollin 2 (DSC2) (ab230039), anti-Toll-like receptor 4 (TLR4) (ab217274), anti-IKK alpha + IKK beta (ab178870), anti-NK-κB p65 (ab16502) and anti-beta Actin (ab8227) antibodies were purchased from Abcam (Shanghai, China). After washing with TBST three times for 10 min, ECL detection, exposure and development were performed. Protein band intensity was measured and quantified by Image Lab software.
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5

Intestinal Protein Expression Analysis

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Relative protein levels of CuSOD, MnSOD, GPX1, GPX4, ZO-1, Claudin-1, Occludin, IL-2, IL-8, and IL-10 in the jejunum were determined using western blotting. Colon samples were collected and the protein expression of CuSOD, MnSOD, GPX1, GPX4, IL-2, IL-8 and IL-10 was determined [22 (link)]. The resultant signals were obtained using Quantity One software (Bio-Rad, Hercules, CA, USA). Primary antibodies were used as follows: CuSOD (1:50000; ab51254, Rabbit, Abcam, UK), MnSOD (1:1000; ab68155, Rabbit, Abcam, UK), GPX1 (1:1000; bs-3882R, Rabbit, Bioss, Beijing, China), GPX4 (1:1000; 14432-1-AP, Rabbit, Proteintech, Rosemont, IL, USA), ZO-1 (1:3000; 21773-1-AP, Rabbit, Proteintech, USA), Occludin (1:1000; ab167161, Rabbit, Abcam, UK), Claudin1 (1:500; ab15098, Rabbit, Abcam, UK), IL-2 (1:2000; ab92381, Rabbit, Abcam, UK), IL-8 (1:2000; ab110727, Rabbit, Abcam, UK), IL-10 (1:1000; 20850-1-AP, Rabbit, Proteintech, USA) and Actin (1:5000; 66009-1-Ig, Mouse, Proteintech, USA).
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Measuring Tight Junction Proteins in ZIKV-Infected Testicular Organoids

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Relative expression of tight junction proteins of ZIKV-infected and uninfected testicular organoids was measured by Western blot. Organoids at 3 days post infection (dpi) were harvested and lysed by radioimmunoprecipitation assay (RIPA) lysis buffer containing protease inhibitor. After determination of protein concentration in each sample by BCA Protein Assay kit (Thermo Fisher Scientific, Waltham, Massachusetts, USA), samples were subjected to 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride (PVDF) membranes. Membranes were blocked in 5% milk at room temperature for 1 ​h, then incubated with rabbit anti-mouse ZO-1 (1:200, Thermo Fisher, 33–9100), rabbit anti-mouse CLDN1 (1:200, Abcam, ab15098), rabbit anti-mouse occludin (1:200, Abcam, ab167161) or rabbit anti-β-actin mAb (1:1000, Cell Signaling Technology, 4970S) antibodies separately at 4 ​°C overnight. After incubation with peroxidase-linked secondary antibodies, membranes were subjected to an Odyssey infrared imaging system (Odyssey LI-COR Biosciences, Lincoln) to visualize the protein expression.
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7

Rumen Epithelium Tight Junction Proteins

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The expression and distribution of ruminal epithelium tight junction proteins were performed via immunohistochemistry. The following antibodies were used in the immunohistochemistry analysis: claudin-1 (ab211737; Abcam), claudin-4 (ab210796; Abcam), occludin (ab167161, Abcam), and ZO-1 (ab214228, Abcam). Specimens were embedded in paraffin after having been fixed via 4% paraformaldehyde solution, sectioned and incubated with antibodies, and dyed by hematein for light microscope observation. Image Pro Plus v.6.0 software was used to choose the same brown color as the consistent criterion for estimating all photos. Each photo was determined to acquire the cumulative optical density of each image.
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8

Molecular Expression Analysis in Inflammation

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Western blot analyses were performed as described previously [23 (link)]. Primary antibodies against inducible nitrogen oxide synthase (iNOS) (Abcam, ab178945, Cambridge, UK), cyclooxygenase 2 (COX-2) (Abcam, ab179800, Cambridge, UK), zonula occludens-1 (ZO-1) (Abcam, ab96587, Cambridge, UK), occludin (Abcam, ab167161, Cambridge, UK), signal transducer and activator of transcript 3 (STAT-3) (Abcam, ab68153, Cambridge, UK), p-STAT-3 (Abcam, ab32143, Cambridge, UK), and GADPH (Abcam, ab8245, Cambridge, UK) were used. Protein signals were detected with efficient chemiluminescence (ECL) reagent based on the manufacturer’s instructions.
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9

Protein Expression Analysis of Epithelial Cell Markers

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Cells were suspended and lysed in radioimmunoprecipitation assay buffer (Beyotime, Beijing, China) supplemented with a protease inhibitor cocktail (Sigma-Aldrich, St Louis, MO, USA). Protein extractions were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% (w/v) reagent-grade nonfat milk (Cell Signaling Technology®, Danvers, MA, USA) and incubated overnight with primary antibodies at 4°C followed by incubation with an appropriate horseradish peroxidase (HRP)-conjugated secondary antibody for 1 hour at room temperature. Protein bands were visualized using Clarity™ Western ECL substrate (Bio-Rad, Hercules, CA, USA). The protein level was quantified using ImageJ software (ImageJ 1.44, National Institutes of Health, Bethesda, MA, USA) normalized to β-actin. The primary antibodies used were as follows: KIF3A (ab133587, 1:1000, Abcam, Cambridge, MA, USA), E-cadherin (ab76055, 1:1000, Abcam), β-catenin (ab32572, 1:1000, Abcam), occludin (ab167161, 1:100000, Abcam), claudin1 (ab15098, 1:50, Abcam), and β-actin (ab8226, 1:500, Abcam).
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10

Colon Protein Extraction and Analysis

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Proteins were extracted from the proximal colon tissues and analyzed on Ready Gel Tris-HCl (Bio-Rad). The tissues were homogenized in RIPA buffer (1% IGEPAL, 0.5% sodium deoxycholate, and 0.1% SDS in Tris-buffered saline solution [pH 7.4]), supplemented with protease inhibitor cocktail (Sigma-Aldrich). The homogenate was centrifuged at 14,000g for 10 minutes at 4°C. Sample lysates were denatured at 95°C for 5 minutes in the presence of 4× LDS sample loading buffer (Invitrogen) and 5% β-mercaptoethanol (Bio-Rad). Equal amounts of protein (30 μg) were separated by 4%–20% Ready Gel Tris-HCl gels (Bio-Rad), transferred to polyvinylidene difluoride membranes, and blocked with StartingBlockT20 blocking buffer (Thermo Fisher Scientific) for 60 minutes at room temperature. Membranes were incubated with rat anti–ZO-1 monoclonal antibody (MABT 11, Sigma-Aldrich) and rabbit recombinant monoclonal anti-OCLN antibody (ab167161, Abcam) at 1:400 dilution at 4°C overnight, and they were then washed in Tris-buffered saline for 1 hour. The membranes were then probed with peroxidase-conjugated secondary antibodies at 1:8000 dilution for 1 hour at room temperature, and the bands were visualized by electrochemiluminescence (ECL, Thermo Fisher Scientific). Signals were quantified using ImageJ (NIH) and normalized to controls.
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