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5 protocols using ab172580

1

Immunofluorescence Analysis of 53BP1

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Immunofluorescence analysis of monolayer cells was performed as described [16 (link)] using anti-53BP1 (ab172580; Abcam) and secondary donkey anti-goat Alexa Fluor 488 secondary antibody (ab150077; Abcam). Nuclei were counterstained with Hoechst 33258. Images were acquired using an Axioplan 2 microscope (Zeiss) with a 63× objective and Axiovision 4.8 (Zeiss) software.
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2

Immunofluorescence and Flow Cytometry Analysis

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Cells seeded on coverslips were fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton X-100 for 10 minutes, and incubated with 5% bovine serum albumin (BSA). Cells were then labeled for 2 hours with primary antibodies specific for phospho-H2AX (Cell Signaling Technology, #2577, 1/400) or 53BP1 (Abcam, AB172580, 1/200). After nuclear staining with DAPI (Sigma), the cells were visualized with a Leica SP5 confocal microscope. Simultaneously, a similar experiment was conducted in parallel to analyze the mean fluorescence intensity of phospho-H2AX by FACScanto II flow cytometry.
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3

Quantification of DNA Damage Markers

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ATM (ab36810, ABCAM, UK), gamma-H2AX (2577, Cell Signaling, MA, USA), Ki67 (sc7846, SantaCruz Biotech, CA, USA), RAD51 (ab88572, ABCAM, UK) DNA-PK (sc390698, SantaCruz Biotech, CA, USA) and 53BP1 (ab172580, ABCAM, UK) were detected according to manufacturers' protocols. Hoechst 33342 staining was performed, and then cells were observed through a fluorescence microscope (Leica Italia, Italy). The percentage of ATM-, gamma-H2AX-, Ki67-, RAD51-, DNA-PK and 53BP1-positive cells was calculated by counting at least 500 cells in different microscope fields.
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4

Immunofluorescence Assay for DNA Damage Markers

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Cells were washed with PBS and fixed with 4% formaldehyde at RT for 15 min. After fixation, cells were washed with 3% BSA/PBS and permeabilized with 0.5% Triton X-100/PBS at RT for 20 min. Next, cells were washed with 3% BSA/PBS and blocked in blocking buffer (10% FBS and 1% BSA in PBS) at RT for 1 h. Then cells were incubated with γH2AX (JBW301; Millipore; 1:500) and 53BP1 (ab172580; Abcam; 1:500) antibodies in the blocking buffer at 4 °C for overnight and washed with PBST. Finally, cells were incubated with goat anti-mouse IgG Alexa Fluor 488 and goat anti-rabbit IgG Alexa Fluor 568 (Thermo Fisher Scientific; 1:1000) in the blocking buffer at RT for 1 h, washed with PBST, and mounted in Vectashield containing DAPI (Vector Laboratories). Images were acquired using a Leica SP5 confocal microscope.
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5

Intestinal Tissue Analysis of Apoptosis and Oxidative Stress

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Intestinal paraffin samples were cut into 4 μm sections, deparaffinized, and stained with primary antibodies for cleaved caspase-3 (#9661; Cell Signaling Technology), cleaved PARP (#94885; Cell Signaling Technology), LC3B (#3868; Cell Signaling Technology), p62 (ab56416; Abcam), 4-HNE (ab46545; Abcam), HO-1 (ab137749; Abcam), Trx1 (#2429; Cell Signaling Technology), Gpx4 (MABF1969; Millipore), γH2AX (#9718; Cell Signaling Technology), 53BP1 (ab172580; Abcam), p-NF-κB p65 (ab86299; Abcam), collagen I (sc-59772; Santa Cruz), collagen III (ab7778; Abcam), occludin (GTX85016; Genetex), ZO-1 (GTX108592; Genetex), and claudin-2 (ab53032; Abcam). Images of the stained sections were acquired using the Olympus BX51 microscope with an Olympus DP72 camera and cellSens Standard 1.14 software (Olympus, Germany).
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