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14 protocols using anti sod1

1

Immunohistochemical Analysis of Angiogenic and Apoptotic Markers

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Six samples from SCV in each group were deparaffinized in xylene and rehydrated by a series of ethanol concentrations from 100% to 75%. Sections were subsequently immersed in 3% hydrogen peroxide solution to inhibit endogenous peroxidase activities and incubated in 10% normal goat serum. Finally, sections were incubated at 4°C overnight against the following primary antibodies: anti-Cadherin 5 (1:100, Boster Biological Technology, China), anti-CD34 (1:200, Abcam, UK), anti-VEGF (1:200, Abcam), anti-CTSD (1:200, Proteintech, USA), anti-SOD1 (1:200, Proteintech), and anti-C-CASP3 [1:200, CST (Cell Signaling Technologies, USA)]. These sections were then incubated with HRP-conjugated secondary antibody (Santa Cruz Biotechnology, Dallas, USA) and counterstained with hematoxylin. Each specimen was imaged at a magnification of ×200 using a DP2-BSW image-acquisition system (Olympus Corp), and absorption values quantified using the Image-Pro Plus software (Media Cybernetics, MD, USA) to assess expressions of Cadherin 5, VEGF, CTSD, SOD1, and C-CASP3 and the number of CD34 positive microvessels.
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2

Spinal Cord Protein Quantification

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Spinal cord section homogenates were resolved in pre-cast 4–20% SDS/PAGE (Bio-Rad, mini-PROTEAN TGX™ gels; Cat#456–1095) under the reducing conditions. The proteins were transferred onto a transfer membrane (Millipore, Immobilon® PVDF membrane, Cat#IPFL00010) and probed with anti-Calcineurinα, (Cat#C1956; Sigma-Aldrich, St Louis, MO, USA; monoclonal antibody) anti-Calcineurinβ, (Cat#C0581; Sigma-Aldrich, St Louis, MO, USA; monoclonal antibody), anti-SOD1 (Cat#100269-1-AP; Protein Tech, USA, Rabbit polyclonal antibody), and anti-TDP-43 (Cat#10782-2-AP; Protein Tech, USA) antibodies. Odyssey/LI-COR detection system (LI-COR Biosciences, Nebraska, USA) was used for analyzing the protein bands (Image Studio Ver.3.1).
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3

Immunostaining Protocol for Vascular Markers

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The processed samples mentioned above were then deparaffinized in xylene, and different concentrations from 100% to 75% of ethanol baths were applied for rehydration. Afterward, the rehydrated specimens were immersed in 3% (v/v) hydrogen peroxide to block endogenous peroxide activities and kept in 10.2 mM of sodium citrate for antigen repair at 95°C for 20 min. Finally, samples were incubated overnight at 4°C with the following required primary antibodies, including anti-Cadherin 5 (1:100, Affinity, Cincinnati, OH, USA), anti-CD34 (1:100, Abcam, Cambridge, UK), anti-VEGF (1:300, Abcam), cleaved caspase-3 (1:200, Cell Signaling Technology, Danvers, MA, USA), anti-SOD1 (1:100, ProteinTech, Chicago, IL, USA), or anti-CTSD (1:100, ABclonal, Woburn, MA, USA), then treated with horseradish peroxidase (HRP)-conjugated secondary antibody, and stained again with hematoxylin. The DP2-TWAN image-acquisition system (Nikon, Tokyo, Japan) was performed to acquire images of the tissue sections on the light microscopy at ×200 magnification. Images were analyzed to quantify for Cadherin 5, CD34, VEGF, C-CASP3, SOD1, and CTSD expression levels; and the amount of CD34-positive microvessels was enumerated. Assessments were acquired from six random visual fields in three tissue sections.
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4

Whole-Cell Lysis and Western Blot Analysis

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Whole-cell lysates were obtained by re-suspending cell pellets in RIPA buffer (50 mM Tris pH 7.4, 150 mM NaCl, 1% Triton X-100) with freshly added protease inhibitor cocktail tablet (Roche). Western blot analyses were performed with anti-Suv39h1 (Proteintech, 10574-1, 1:1,000), anti-Suv39h2 (Genetex, GTX129167, 1:1,000), anti-HP1α (Proteintech, 11831-1, 1:1,000), anti-HP1β (Proteintech, 10241-1, 1:1,000), anti-HP1γ (Proteintech, 11650-2, 1:1,000), anti-SOD1 (Proteintech, 10269-1, 1:1,000), anti-SOD2 (Proteintech, 24127-1, 1:1,000), anti-catalase (Proteintech, 21260-1, 1:1,000), anti-α-SMA (Sigma, F3777, 1:5,000), anti-SIRT1 (Abcam, ab110304, 1:2,000), anti-collagen type I (Rockland, 001-001-103, 1:2,000), RNA Polymerase II (Santa Cruz, SC-899, 1:2,000) and anti-β-actin (Sigma, A5441, 1:5,000) antibodies. Uncropped western blots are presented in Supplementary Fig. 32.
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5

Oxidative Stress Response in MC3T3-E1 Cells

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MC3T3-E1 cells were cultured with 300 μM H2O2-supplemented medium for 4 d. Next, the total proteins were collected by 1% sodium dodecyl sulfonate (SDS) solution. 20 μL protein extract was loaded on 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE). After transferring to polyvinylidene fluoride (PVDF) membranes, they were incubated with anti-Nrf2 (110 kDa, Proteintech), anti-β-actin (42 kDa, Proteintech), anti-HO-1 (28–33 kDa, Proteintech), and anti-SOD1 (16–20kDa, Proteintech) antibodies, respectively. The target proteins were further labeled with the HRP-conjugated secondary antibodies and visualized with enhanced ECL Western Blot Kit (Thermo Co.). The protein bands’ intensity was quantified using the Image J software and normalized with that of β-actin.
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6

Antibody Characterization in Cell Research

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Calcium and magnesium free PBS (PBS; #10010‐023), and Hoechst 33258 (#H3569) were from Invitrogen (Waltham, MA). Triton X‐100 (#T8787) was obtained from Sigma–Aldrich (St. Louis, MO). Antibodies used in the current study were as follows: Mouse anti‐RPE65 (#NB100‐355) [clone 401.8B11.3D9]; Novus Biologicals, Centennial, CO), mouse anti‐DSG1 (#610273, BD Transduction, Franklin Lakes, NJ), mouse anti‐Cytokeratin 10 (#MA5‐13705 [clone DE‐K10]; ThermoFisher, Waltham, MA), rabbit anti‐Syntenin‐1 (#ab19903]; Abcam, Cambridge, MA), mouse anti‐Annexin II (#610068, BD Transduction Laboratories, Franklin Lakes, NJ), rat anti‐Integrin Beta 1 (AIIB2 clone, Developmental Studies Hybridoma Bank, Iowa City, IA), mouse anti‐Occludin (#66378‐1‐Ig, Proteintech, Rosemont, IL), rabbit anti‐Calreticulin (#12238 [clone D3E6]; Cell Signaling Technologies, Danvers, MA), anti‐SOD1 (#10269‐1‐AP, Proteintech), anti‐Catalase (#66765‐1‐Ig, Proteintech), anti‐MDA (#NBP2‐59367, Novus Biologicals), anti‐HSPA5 (#PA5‐19503, ThermoFisher), anti‐CLDN19 (#SC‐36597, Santa Cruz Technology, Dallas, TX), HRP‐conjugated donkey‐anti‐rat IgG (#712‐035‐153, Jackson ImmunoResearch Laboratories, West Grove, PA), HRP‐conjugated donkey‐anti‐mouse IgG (#715‐035‐150, Jackson ImmunoResearch) and HRP‐conjugated donkey‐anti‐rabbit IgG (#711‐035‐152, Jackson ImmunoResearch).
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7

Immunoblotting for APP, BACE1, and Oxidative Stress

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Anti-C20 (1:1000) antibody used to detect APP and its β-CTFs was kindly provided by laboratory of Professor Weihong Song. Anti-BACE1 (1:1000, ab183612) and anti-PS1 (1:1000, ab76083) antibodies were purchased from Abcam (Cambridge, MA, USA). Anti-Ubquitin (1:1000, #10201-2-AP), anti-Beclin-1 (1:1000, #11306-1-AP), anti-Nrf2 (1:1000, #10396-1-AP), anti-HO-1(1:1000, #10701-1-AP), anti-SOD-1 (1:1000, #10269-1-AP), and anti-caspase-3 (1:1000, #66470-2-Ig) antibodies were obtained from Proteintech (Wuhan, Hubei, China). Anti-P62 (1:1000, H00008878-M01), anti-LC3 (1:1000, #12741) and anti-β-actin (1:3000, A5411) antibodies were purchased from Abnova (Taipei, Taiwan, China), Cell Signaling Technology (Danvers, MA, USA) and Sigma (St. Louis, MO, USA), respectively.
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8

Western Blot Analysis of Protein Expression

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Total protein from tissues was extracted in a mixture of ice-cold RIPA (Beyotime Biotechnology, China) and protease inhibitor. Proteins were separated by 10% SDS-PAGE and electro-transferred to PVDF membrane (Millipore, Burlington, MA, United States). The membranes were blocked for 2 h at room temperature with 5% BSA in TBST solution and then incubated with primary antibodies of anti-HIF-1α (1:1000, Abcam), anti-Occludin (1:1000, Proteintech), anti-SOD1 (1:1000, Proteintech), anti-GPX1 (1:1000, Affity) and anti-βactin (1:1000, Abcam), respectively, at 4°C overnight. After being washed with TBST, the membranes were incubated with the secondary antibody (goat anti-rabbit) (1:5000, Biosharp) for 1 h and were then washed three times with TBST. The bands were then detected and analyzed by Western Bright ECL (Advansta, San Jose, CA, United States) and Image Lab 4.1 software (Bio-Rad).
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9

Comprehensive Antibody Panel for Vascular Endothelial Analysis

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Antibodies include anti-KCa3.1 (Abcam, ab229593, and Alomone Labs, #ALM-051), anti-p-eNOS (Cell Signaling Technology, #9571s), t-eNOS (Cell Signaling Technology, #9572s), anti-TM (Proteintech, 14318-1-AP), anti-NOX2 (Proteintech, 19013-1-AP), anti-SOD1 (Proteintech, 10269-1-AP), anti-CD31 (Proteintech, 66065-1-Ig), GPx1 (Cell Signaling Technology, #3206S), anti-4HNE (Abcam, ab46545), anti-β-actin (Santa Cruz, sc-47778), and anti-GAPDH (Santa Cruz, sc-47724).
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10

Immunofluorescence Analysis of Urogenital Tissues

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Paraffin sections, providing a clear and comprehensive view of the urethra, hindgut, URS, and rectourethral fistulas, were chosen for staining. Subsequently, the sections underwent deparaffinization and antigen retrieval. Blocking was carried out with serum (ZSGB-BIO, Beijing, China) at 25 °C for 1 hour, followed by overnight incubation at 4 °C with primary antibodies. The primary antibodies used were as follows: Anti-Pcsk9 (1:100), anti-Hmgb2 (1:100), and anti-Sod1 (1:100), all sourced from Proteintech (Wuhan, China). After PBS washes, the sections were incubated at 25 °C in the dark for 1 hour with fluorescent secondary antibodies: goat anti-rabbit 488 (1:100; Proteintech). Following PBS washes, the sections were stained with DAPI solution (Servicebio Technology, Wuhan, China) for 10 minutes. Finally, the sections were mounted using an anti-fluorescence fading medium (Solarbio, Beijing, China), and images were captured using a laser-scanning confocal microscope (LSM 880, Zeiss, Oberkochen, Germany).
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