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Ultrapure rna kit dnase 1

Manufactured by CWBIO
Sourced in China

The Ultrapure RNA Kit (DNase I) is a laboratory product designed for the extraction and purification of high-quality RNA from a variety of sample types. The kit includes a DNase I enzyme that removes DNA contamination during the RNA purification process, ensuring the isolation of pure, DNA-free RNA.

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11 protocols using ultrapure rna kit dnase 1

1

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA from cells was extracted with Ultrapure RNA Kit (DNase I) (CWBIO, China) according to manufacturer's instructions. The cDNA was synthesized using PrimeScript RT reagent Kit with gDNA Eraser (Takara, Japan), and qRT-PCR was conducted with TB Green Premix Ex Taq II (Takara, Japan) on ABI 7500 system (Applied Biosystems, USA). The GAPDH expression was used as a control and relative gene expression was calculated by the 2-ΔΔCt method. The primers used for qRT-PCR were listed in Table 1.
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2

Genetic Transformation of Nicotiana benthamiana

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Nicotiana benthamiana was used for genetic transformation, the seeds of this tobacco from Laboratory stocks. Escherichia coli strains DH5α and XL10-Gold, and Agrobacterium tumefaciens strain GV3101 (WeidiBio, Shanghai, China) were used in this study. HPLC-grade acetonitrile, methanol, and formic acid were purchased from Fisher (Emerson, IA, USA). The ClonExpress Ultra One Step Cloning Kit, ClonExpress MultiS One Step Cloning Kit, ClonExpress Ultra One Step Cloning Kit, 2× Rapid Taq Master Mix, HiScript III 1st Strand cDNA Synthesis Kit (+gDNA wiper), and Taq Pro Universal SYBR qPCR Master Mix were purchased from Vazyme Biotech Co., Ltd. (Nanjing, China). The Ultrapure RNA Kit (DNase I) was obtained from CWBIO. Co., Ltd. (Beijing, China). The plant genomic DNA kits, restriction enzymes, and DNA Marker III were purchased from TianGen Biotech Co., Ltd. (Beijing, China). The KOD OnePCR master Mix was obtained from TOYOBO Biotech Co., Ltd. (Shanghai, China). The PBI121 and pCAMBIA1300 plasmids were from laboratory stock. The baicalein standard was obtained from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China) unless otherwise specified. All crocin standards, including crocin V, crocin IV, crocin III, crocin II, and crocin I, as well as crocetin were purchased from the third-party scientific research platform CASmart (https://www.casmart.com.cn/ [1 January 2023]).
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3

Quantitative Expression Analysis of S. ahygroscopicus

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S. ahygroscopicus S91 and its mutants were cultured on a solid fermentation medium for 48 h. Then the mycelia was harvested, and the total RNA were isolated using the Ultrapure RNA Kit (DNase I) (Cwbio). cDNA was reverse transcripted using the PrimeScript™ RT Reagent Kit (TaKaRa). The qRT-PCR analysis was performed using the MightyAmp™ for Real Time (SYBR®Plus) (TaKaRa). The relative mRNA levels were analyzed using the 2−ΔΔCt method, with the housekeeping gene hrdB as an internal reference. The hrdB was amplified using the primers PB-RT-1 and PB-RT-2. The ttmRIV was amplified using the primers RIV-RT-1 and RIV-RT-2. The ttmD was amplified using the primers TD-RT-1 and TD-RT-2.
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4

Quantitative Real-Time PCR Protocol

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Total RNA from cells was extracted using Ultrapure RNA Kit (DNase I) (CWBIO, Beijing, China) according to the manufacturer's instructions. Reverse transcription was performed using HiFiScript cDNA Synthesis Kit (CWBIO, Beijing, China). Real‐time PCR was performed using UltraSYBR Mixture (CWBIO, Beijing, China) and a CFX96™ Real‐Time PCR Detection System (Bio‐Rad, Hercules, CA, USA). The thermal cycling conditions included 2 min at 50°C and 10 min at 95°C, followed by 40 cycles of 95°C for 15 s, 58°C for 30 s and 72°C for 30 s. Mouse β‐actin was used as internal control. The relative expression levels of each gene were analysed using the 2‐ΔΔCt method. The primers were designed using Primer3Plus platform (http://www.bioinformatics.nl/primer3plus) and synthesized by Sangon Biotech (Shanghai, China). The sequences of forward and reverse primers for these genes are listed in Table S1.
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5

Quantifying miRNA and mRNA Levels in Glioma

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Total RNA and miRNA were extracted from glioma specimens, normal brain tissues, and cells using the Ultrapure RNA Kit (DNase I; CWBIO, China) and the miRcute miRNA Kit(TIANGEN, China) following the manufacturers’ instructions. RNA was reverse transcribed to complementary DNA (cDNA) by using the TIANScript cDNA Kit (TIANGEN, China). The miRcute miRNA First-Strand cDNA Synthesis Kit (TIANGEN, China) was used to generate cDNA from miRNA. Primers for each transcript were synthesized by Invitrogen (Shanghai, China) and are listed in Table 2. U6 and GAPDH were used as endogenous controls for miRNA and gene expression detection, respectively. The SYBR®Green Real-time PCR Kit (Takara, Liaoning, China) and the miRcute Plus miRNA qPCR Detection Kit (TIANGEN, China) were used for qRT-PCR assays using the ABI 7500 Real-Time PCR System (Applied Biosystems, CA, USA). Relative expression was normalized to that of endogenous controls using the comparative cycle threshold method, and the fold change in gene expression was calculated using the 2−ΔΔCt method.
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6

Investigating BspJ's Impact on NME2 and CKB

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We try to understand the impact of the interaction of BspJ with the NME2 and CKB proteins on the expression of these proteins. The pcDNA3.1-BspJ and pcDNA3.1 plasmids were transfected into HEK293T cells with Lipofectamine 3000 (Invitrogen, United States). After 24 h, add TRIzon Reagent (CWBIO, China) to lyse the cells, use Ultrapure RNA Kit (DNase I) (CWBIO, China) to extract cell total RNA, and then use HiFiScript cDNA Synthesis Kit (CWBIO, China) to reverse into cDNA. Using cDNA as a template, qRT-PCR was performed using the ABI QuantStudioTM 5 (Thermo Fisher Scientific, United States) instrument and SYBR Green fluorescent DNA binding dye, which assays gene expression level of NME2 and CKB. The relative expression level normalization is for GAPDH. The sequences of primers were NME2-F: CCTGGGCTGGTGAAGTACATGAAC, NME2-R: TGGTGCCTGGCTTTGAATCTGC; CKB-F: CGACTTCAGA AGCGAGGCACAG, CKB-R: TCACTCCGTCCACCACCAT CTG and GAPDH-F: GGAGCGAGATCCCTCCAAA AT, GAPDH-R: GGCTGTTGTCATACTTCTCATGG. The amplification cycle steps are 95° for 30 s, 60° for 30 s, and 72° for 30 s. The 2–ΔΔCT approach was used to calculate the qRT-PCR data, and the values were normalized based on the expression level of housekeeping genes.
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7

Micro-Tom Tomato Transformation Protocol

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Lycopersicon esculentum (Micro-Tom tomato) was used for plant transformation. Escherichia coli strains DH5α, XL10-Gold and Agrobacterium tumefaciens strain GV3101 (WeidiBio, Shanghai, China) were used in this experiment.
HPLC-grade formic acid, methanol and acetonitrile were purchased from Fisher (Emerson, IA, USA). ClonExpress Ultra One Step Cloning Kit, HiScript III 1st Strand cDNA Synthesis Kit (+gDNA wiper) and Taq Pro Universal SYBR qPCR Master Mix were purchased from Vazyme Biotech Co., Ltd. (Nanjing, China). Ultrapure RNA Kit (DNase I) was obtained from CWBIO. Co., Ltd. (Beijing, China). Plant genomic DNA kits, restriction enzymes and DNA Marker II were purchased from TianGen Biotech Co., Ltd. (Beijing, China). KOD One PCR master Mix was obtained from TOYOBO Biotech Co., Ltd. (Shanghai, China). The PBI121 and pCAMBIA1300 plasmids were from laboratory stock. The baicalein standard was obtained from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). Other reagents were purchased from Beijing Chemical Corporation (Beijing, China) unless otherwise specified.
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8

TERT Expression Quantification in BMECs

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Total RNA was extracted from the BMECs using an Ultrapure RNA Kit (DNaseI, CWBIO, Jiangsu, China) to detect TERT expression levels. Primers for TERT were designed (General Biol, Anhui, China) (primer sequences: TERT-F TCTTGTCAGTCTTGCGGTTGA; TERT-R CAAAGGGAAGCCGAATCACAC), and the HiFiScript cDNA synthesis kit (CWBIO, Jiangsu, China) was used to synthesize the first-strand cDNA. Amplification was performed at 95 °C for 10 min, followed by 40 cycles at 95 °C for 10 s and at 60 °C for 30 s with UltraSYBR Mixture (CWBIO, Jiangsu, China).
Information about the position of the amplification was: NM_053423.1 Rattus norvegicus telomerase reverse transcriptase (Tert), mRNA, 2900-3043, amplification length 144bp. The final data were analyzed using the 2- Δ ΔCt method which was normalized to a housekeeping gene.
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9

Gene Expression Analysis via qRT-PCR

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Total RNA was isolated using Ultrapure RNA Kit (DNase I) (CWBIO, China) according to the manufacturer’s instructions. The cDNA was synthesized with the PrimeScript RT reagent Kit with gDNA Eraser (Takara, Japan). qRT-PCR was performed using the TB Green Premix Ex Taq II (Takara, Japan) in ABI 7500 Real-Time PCR instrument. GAPDH was acted as an internal control. The primer sequences used for qRT-PCR were recorded in Table 1. The relative mRNA levels were normalized to GAPDH and calculated by the 2−ΔΔCt method.

All Primers for qRT-PCR of NSD2 and GAPDH

Primer Sequences
NSD2
 Forward5’-AATATGACTCCTTGCTGGAGCAGG-3’
 Reverse5’-ATTTCAACAGGTGGTCTTTGTCTC-3’
GAPDH
 Forward5’-AACGGATTTGGTCGTATTGGG-3’
 Reverse5’-CGCTCCTGGAAGATGGTGATG-3’
SD2 siRNA (siNSD2)
 Sense5’-CCAGCUAAGAAAGAGUCUUTT-3’
 Antisense5’-AAGACUCUUUCUUAGCUGGTT-3’
Negative control (siNC)
 Sense5’-UUCUCCGAACGUGUCACGUTT-3’
 Antisense5’-ACGUGACACGUUCGGAGAATT-3’

Abbreviation: qRT-PCR, quantitative real-time polymerase chain reaction.

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10

Quantitative RT-PCR Analysis of Apramycin Biosynthesis

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S. tenebrarius and ΔtobM2 were cultured on a solid fermentation medium for 48 hrs. Then the mycelia was harvested and the total RNA were isolated using the Ultrapure RNA Kit (DNase I) (Cwbio). cDNA was reverse transcripted using the PrimeScript™ RT Reagent Kit (TaKaRa). The semi-quantitative RT-PCR analysis was performed. The 16SrRNA as an internal reference was amplified using the primers RT-16SrRNA-1 and RT-16SrRNA-2. Five apramycin biosynthesis genes and tobM2 were tested.
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