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Alexa 488 conjugated anti rabbit igg antibody

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The Alexa Fluor® 488-conjugated anti-rabbit IgG antibody is a secondary antibody that binds to rabbit primary antibodies. Alexa Fluor® 488 is a bright, green-fluorescent dye that can be detected using flow cytometry or fluorescence microscopy.

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17 protocols using alexa 488 conjugated anti rabbit igg antibody

1

Binding Assay for rJHP0290 Protein

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Binding assays were performed as described previously [42 (link)]. Briefly, the cells were treated with Wt or mutant rJHP0290 (2 μg/ml) for 15 min, followed by extensive washing with PBS to remove unbound protein. The cells were incubated with an anti-JHP0290 antibody (1:5,000 dilution) in FACS buffer (2% BSA in PBS) for 1 h on ice, followed by washing with FACS buffer and incubation with an Alexa 488-conjugated anti-rabbit IgG antibody (Molecular Probes) (1:5,000 dilution) in FACS buffer for 30 min on ice. After incubation, the cells were washed twice with FACS buffer and analyzed using an LSRFortessa flow cytometer. FlowJo software (Tree Star, USA) was used for the data analysis.
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2

Antibody Characterization for Ciliary Proteins

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Primary antibodies used in this study were those against outer arm IC2 and IC3 (Hozumi et al., 2006; Padma et al., 2001) ; outer arm LC1 (LRR) and LC2 (Tctex2) (Hozumi et al., 2006; Padma et al., 2001) ; PKA-R (Hozumi et al., 2008) ; calaxin (Mizuno et al., 2009) ; Ap58 (Ogawa and Inaba, 2006) ; inner arm IC116 (Hozumi et al., 2008) ; RSP3 (Padma et al., 2003) ; HSP40 (Satouh et al., 2005) ; LRR37 (Padma et al., 2001) ; MORN40 (Satouh et al., 2005) ; PF16 (Ci-Spag6; Satouh and Inaba, 2009) ; inner arm dynein IC105 (ortholog of Chlamydomonas f/I1 dynein IC97; Wirschell et al., 2009) . All antibodies were prepared according to the method of Padma et al. (2003) . Anti-acetylated α-tubulin (Lys40) rabbit monoclonal antibody (RM318) was purchased from Invitrogen Corp. Anticentrin mouse monoclonal antibody (clone 20H5) was purchased from Sigma-Aldrich Co., Ltd. For secondary antibody, goat antimouse IgG (H + L)-HRP (Invitrogen Corp.) was used for western blotting. Alexa 488-conjugated anti-rabbit IgG antibody and Alexa 546-anti-mouse IgG antibody were purchased from Molecular Probes and used as secondary antibodies for immunofluorescent labeling (1:1000 dilution).
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3

Reagents and Antibodies for Cell Assays

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ACh, norepinephrine (NE), histamine, bovine serum albumin (BSA), and sodium nitroprusside (SNP) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Fetal bovine serum (FBS) was obtained from HyClone Laboratories Inc (Logan, UT, USA). The anti-mAChR and IgG2α antibodies were purchased from Santa Cruz (Santa Cruz, CA, USA). Alexa 488-conjugated anti-rabbit IgG antibody was ordered from Molecular Probes (Eugene, OR, USA).
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4

Deferoxamine Modulates HIF-1α Expression

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Cells were cultured on glass chamber slides at 37 °C overnight and exposed to deferoxamine (0, 100 μM) for 24 hours. Cells were then fixed with 4% paraformaldehyde for 15 minutes, permeabilized with −20 °C methanol and 0.5% Triton X-100/PBS, and blocked with 10% fetal bovine serum and 2% bovine serum albumin in PBS. Cells were incubated with primary antibody for HIF-1α (#ab51608, Abcam, Cambridge, UK, 1:500) at 4 °C overnight. After washing by PBS twice, cells were incubated with Alexa 488-conjugated anti-rabbit IgG antibody (Invitrogen, CA, USA, 1:200) at room temperature for 10 minutes. After washing by PBS twice, the nuclei were stained with DAPI.
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5

Retinal Tissue Analysis in Female Flies

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For analysis of retinal tissues in one day-old female flies, fly heads were fixed in Carnoy’s fixative solution and embedded in paraffin. The serial 3 µm sections were stained with hematoxylin and eosin. For immunohistochemical analysis, the eye imaginal discs of third instar larvae were immunostained with primary antibodies including anti-PPR antibodies (SGJ-1705 and SGJ-1706) at 1/1,000 dilution or an anti-TDP-43 antibody (Proteintech) at 1/1,000 dilution and Alexa 488-conjugated anti-rabbit IgG antibody (Invitrogen) at 1/2,000 dilution as the secondary antibody. For quantification assay of PPR protein area, data were collected from 5–10 independent fly samples in each genotype repeated with at least two independent experiments. The numbers of cells with cytoplasmic TDP-43 were calculated using the National Institutes of Health Image J software and at least five discs were analyzed for each genotype. Primary antibodies are listed in Key Resource Table. Experiments were conducted in a blinded fashion.
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6

Gut Length Measurement in E18.5 Embryos

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For measurement of the gut length in E18.5 embryos, the digestive tract was dissected out from 16 control and 6 Dlg1-/- mice, and the length between the pylorus and the distal end of the rectum was measured. For analysis of embryos at an earlier stage, intestines were dissected out from 6 control and 11 Dlg1-/- mice, and the enteric nerve plexus was stained by whole-mount immunohistochemistry with an anti-NGFR/p75 antibody (Promega, Fitchburg, WI, USA) and an Alexa 488-conjugated anti-rabbit IgG antibody (Invitrogen). Fluorescence images were captured by SteREOLumar.V12 and AxioCamMRm (Carl Zeiss), and the distances from the pylorus to the distal end of the NGFR/p75 signals, from the pylorus to the ileocecum (length of the small intestine), and from the ileocecum to the distal end of the rectum (length of the large intestine) were measured.
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7

Immunohistochemical Analysis of Mouse Skin

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Mouse skin tissues were fixed in 4% paraformaldehyde for 24 h, embedded in paraffin and sectioned. Sections were deparaffinized and stained with H&E for histopathological analysis. For immunohistofluorescence analysis, antigen retrieval was performed in sodium citrate buffer (10 mM Sodium Citrate, 0.05% Tween 20, pH 6.0) at 100 °C for 20 min, and blocked in 10% normal serum, 1% BSA, 0.1% Triton X-100 in PBS for 2 h at room temperature. Sections were incubated with anti-IL-17 antibody (Novus Biologicals, NBP1-72027, 1:100) and CCR6 antibody (Abnova, PAB12270, 1:250) overnight at 4 °C. After washing with PBS, sections were stained with Alexa 594 conjugated anti-Rat Ig G antibody (Invitrogen, A11007, 1:500) and Alexa 488 conjugated anti-Rabbit Ig G antibody (Invitrogen, A11008, 1:500) for 1 h at room temperature. Following PBS washing, sections were counterstained with DAPI, mounted in ProLong™ Diamond Antifade Mountant (Thermo Fisher Scientific, P36965), and analyzed under a confocal fluorescence microscope (Olympus, FV3000).
To measure keratinocyte proliferation in mouse skin tissue. 1 mg BrdU (Roche) was injected 12 h before killing. Fixed and paraffin embedded sections were deparaffinized and boiled in citrate buffer, and incubated with anti-BrdU antibody, followed by HRP-conjugated goat anti-mouse Ig G (Thermo Fisher Scientific, 31431, 1:5000)
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8

Visualizing Protein Expression in Cells

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Cells were cultured on 35-mm glass bottom dishes (Iwaki glass) for 24 h with or without 1 μg/ml doxycycline. For the confocal microscopy analysis of the expression of HRP, hmKR or hmAG, each expressed cells were treated with antibodies against HRP (Jackson ImmunoResearch), hmKR (MBL) or hmAG (MBL) at room temperature for 20 min. Then, the cells were treated with Alexa 488-conjugated anti-goat IgG antibody (Invitrogen) for HRP, Alexa 555-conjugated anti-mouse IgG antibody (Invitrogen) for hmKR and Alexa 488-conjugated anti-rabbit IgG antibody (Invitrogen) for hmAG at room temperature for 20 min. After washing with PBS, the cells were fixed with 7.4% formaldehyde-PBS solution at room temperature for 10 min. The cells were gently washed with PBS, and observed with confocal laser scan microscopy (FLUOVIEW FV1000, OLYMPUS).
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9

Visualizing GDNF Expression in Astrocytes of Rat Striatum

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To identify cells expressing GDNF in astrocytes of rat brain striatum, frozen coronal sections (10 mm) collected from the striatal and cortical region (þ1 mm) through the bregma were incubated at 4 C overnight with goat polyclonal anti-GDNF antibody (1:200, R&D systems) and rabbit polyclonal anti-glial fibrillary acidic protein (GFAP, 1:500, Dako, Glostrup, Denmark), which is a marker of astrocytes [19] . After three washes, sections were incubated with Alexa 488-conjugated anti-rabbit IgG antibody (1:5000, Invitrogen) and Alexa 568-conjugated anti-goat IgG antibody (1:5000, Invitrogen) for 1 h. Square images (5 Â 5 mm) were collected using confocal microscopy (C1si-TE2000-E; Nikon). Raw images were initially grayed and converted to binary using the Scion image software package (version 4.0.3., Scion cooperation, Fredrick, MD). The numbers of binary pixels in the images were measured automatically [20] .
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10

Analyzing Ilf3 Mutant Neuron Development

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Dissociated AMY neurons were prepared from Ilf3+/+ and Ilf3ΔPrLD/ΔPrLD littermates at embryonic day 16-18 (E16-18). Neurons were plated at a density of 5.2 × 103 cells/cm2 onto poly-D-lysine-coated coverslips (Matsunami, Osaka, Japan) in Neurobasal-A medium (Thermo Fisher Scientific) containing B-27 supplement (Thermo Fisher Scientific), 0.5 mM glutamine, and 25% Neuron culture medium (FUJIFILM Wako Pure Chemical). Cultured neurons were incubated at 37°C in a 5% CO2 incubator. They were fixed with 3.7% formaldehyde in PBS for 10 min at 3, 5, and 7 days in vitro (DIV).
Immunostaining was performed as described above. The primary antibodies used were anti-MAP2 rabbit polyclonal antibody (ab32454, Abcam) and anti-Tau-1 mouse monoclonal antibody (MAB3420, Sigma-Aldrich). Secondary antibodies were Alexa488-conjugated anti-rabbit IgG antibody (Thermo Fisher Scientific) and Cy3-conjugated anti-mouse IgG antibody (Jackson ImmunoResearch, West Grove, PA). Fluorescence images were acquired using the A1 confocal laser scanning microscope with a 20× or 40× objective. Serial images acquired at 0.5 μm steps were z-stacked. Concentric circles were drawn at 30 μm intervals around the nucleus for Sholl analysis, where the number of intersections was counted. One of the neurites with the strongest tau staining was determined to be the axon.
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