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12 protocols using erk1 2 4695

1

Investigating Hepatic Oxidative Stress Pathways

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Antibodies for GAPDH (3683), F4/80 (70076), phospho–NF–κB p65 Ser536 (3033), NF-κB p65 (8242), phospho-AKT Ser473 (4060), phospho-ERK1/2 Thr202/Tyr204 (4370) and ERK1/2 (4695) were from Cell Signaling Technology; AKT (sc-81434), phospho-eNOS Ser1177 (sc-21871-R), eNOS (sc-376751), iNOS (sc-7271), SOD1 (sc-271014) and GPx1/2 (sc-133160) were from Santa Cruz Biotechnology; CYP2E1 (ab28146), NOX2 (ab129068), NOX4 (ab216654) and 4-hydroxynonenal (4-HNE, ab46545) were from Abcam. Antibodies for murine (AF3954) and human (MABS197) PTP1B were from R&D Systems and Millipore, respectively. Information on the used antibodies is detailed in Supplementary Table 1. N-acetylcysteine (NAC; A9165) and hydrogen peroxide (H2O2; 386790) were from Sigma. PTP1B pharmacological inhibitor (DPM-1001) was from Glixx Laboratories (GLXC-11401). Dr. Zhaoli Sun (Johns Hopkins University) kindly provided de-identified human liver biopsies from healthy donors and alcoholic hepatitis patients.
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2

Signaling Pathways Regulation Protocol

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The primary antibodies against Akt (9272), p-Akt (Ser473) (4060 P), cleaved caspase-3 (9661), p-p70S6K (9205), p70S6K (9202), p-ERK1/2 (4370), and ERK1/2 (4695) were purchased from Cell Signaling Technology. The primary antibodies against TRPC3 (ACC-016) and TRPC6 (ACC-017) were purchased from Alomone. The primary antibody against LC3B (L7543) was purchased from Sigma-Aldrich. The primary antibody against β-actin (TA-09) was purchased from the ZhongShan Biotechnology Company. The secondary antibodies HRP-conjugated anti-rabbit IgG (110777) and anti-mouse IgG (117228) were purchased from the KeRui Biotechnology Company. H2O2 (107298) was purchased from Millipore. Chloroquine (C6628) and t-BOOH (458139) were purchased from Sigma-Aldrich. SAR7334 (HY-15699), bafilomycin A1 (HY-100558), MK2206 (HY-10358), and U0126 (HY-12031) were purchased from MedChemExpress.
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3

Investigating Cellular Signaling Pathways

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Antibodies: PARP-1 (9532), AIF (5318), GAPDH (2118), Lamin B (12586), p-AKT (4060), p-P38 (4511), p-ERK1/2 (4370), AKT (4691), P38 (8690), and ERK1/2 (4695) were obtained from Cell Signaling Technology (Danvers, MA, USA). Goat anti-rabbit IgG (H&L) (HS101-01) were obtained from TransGen Biotech (Beijing, China). PAR antibody (AM80) was from Merck Millipore (CA, USA). Alexa Fluor 488 goat anti-rabbit (A-11034) secondary antibodies were obtained from Thermo Fisher Scientific (Pittsburgh, PA, USA). GAPDH (60004-1-Ig) was purchased from Proteintech (Wuhan, Hubei, China).
Reagents: LPS (L4391) was purchased from Sigma (Louis, MO, USA), erlotinib (S1023) and 3-AB (S1132) were obtained from Selleck.cn (Shanghai, China).
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4

Retinal Protein Expression Analysis After Ischemia-Reperfusion Injury

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Retinal tissue was harvested 24 h after IRI to investigate protein expression. Total protein from 75% of the retina was extracted and processed for Western blotting, as previously described [56 (link),57 (link)]. The membranes were blocked with 5% skim milk or bovine serum albumin in Tween20/PBS to minimize non-specific antibody binding and were subsequently incubated overnight with the following protein-specific antibodies, diluted as recommended by the manufacturer (iNOS#130246, VEGF#102643, ICAM-1#100450, caspase 3 #110543, cleaved caspase #86952, all Genetex, Irvine, CA, USA; ß-actin #3700, p-p38 #4511, p38 8690, p-ERK1/2 #9101, ERK1/2 #4695, all Cell Signaling Technology, Danvers, MA, USA). After incubation with a horseradish peroxidase-conjugated anti-rabbit secondary antibody (GE Healthcare, Freiburg, Germany), the proteins were visualized with an enhanced chemiluminescence Western blotting detection reagent (Western Lightning plus enhanced chemiluminescence, #NEL104001EA, PerkinElmer, Waltham, MA, USA), according to the manufacturer’s instructions to visualize the proteins. Relative changes in protein expression in retinas exposed to IRI in the four treatment groups were calculated based on the untreated retinas of each respective animal. The chemiluminescence imaging system Fusion Fx® (Vilber, Collegién, France) was employed for recordings and densitometric analysis.
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5

Western Blot Analysis of Signaling Pathways

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Cells were gently washed two times in PBS and then lysed in sample buffer 2X. The extracts were sonicated (50 W, 30 s), incubated on ice for 15 min, and boiled for 5 min. The samples were then subjected to 10% SDS‐PAGE. Immunoblots were probed with the following antibodies: pERK1/2 (4370S;1:1000), ERK1/2 (4695;1:1000), P38 (9212S; 1:1000), pP38 (9216S; 1:1000), JNK (9258;1:1000), and pJNK (9251S;1:1000) antibodies were obtained from Cell Signaling. GAPDH (MAB374;1:1000), Tubulin (05–829;1:1000), RAS, and RAS‐GTP (RAS activation kit) antibodies were obtained from Millipore. FBXO42 (ab81638;1:500) was obtained from Abcam.
Blots were developed with HRP‐conjugated anti‐mouse or anti‐rabbit Abs, using SuperSignal West Pico Chemiluminescent Substrate or SuperSignal West Femto Chemiluminescent Substrate from Thermo Scientific. pERK trametinib‐treated Western blots were developed using SuperSignal West Femto Chemiluminescent. Pictures of the blots were taken using Bio‐Rad ChemiDoc MP System. Quantification was done using Image Lab (Bio‐Rad).
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6

Western Blot Analysis of Signaling Proteins

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ERK1/2 (4695, 1:2000), p-ERK1/2 (4370, 1:2000) and MTDH (14065, 1:2000) antibodies were purchased from Cell Signaling Technology (Carlsbad, CA). E2F3 (ab50917, 1:2000), KLF5 (ab137676, 1:2000) and GAPDH (ab8245, 1:10,000) antibodies were bought from Abcam (Cambridge, UK). HRP-conjugated secondary antibodies against rabbit (ab6721, 1:10,000) and mouse (ab205719, 1:10,000) were obtained from Abcam. Proteins were extracted from cells by RIPA lysis buffer (Thermo Fisher Scientific). Protein concentration was determined by a BCA Protein Assay kit (Thermo Fisher Scientific). A 25 μg proteins were loaded in 8% SDS-PAGE gels, transferred to PVDF membranes and blocked in 5% non-fat milk at room temperature for 1 hour. The membrane was incubated by primary antibodies and secondary antibodies at room temperature for 2 hours sequentially. The blots were developed with an ECL Western Blotting Substrate Kit (Pierce; Thermo Fisher Scientific). The intensity of bands was measured with Image J software 1.6.0 (National Institute of Science).
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7

Analyzing NF1 and MEK Signaling in Melanoma

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Cell pellets were lysed in RIPA buffer supplemented with protease and
phosphatase inhibitors, and the levels of proteins were estimated with the
Bio-Rad kit (Bio-Rad Laboratories). For NF1 analysis, cell extracts from
different melanomas (20 µg/lane) were subjected to protein blot analysis
with a 3%–8% Tris-acetate gel, Tris-acetate SDS running
buffer and NuPAGE transfer buffer (Life Technologies, NP0006). The membranes
were probed with anti-NF1 (Bethyl Laboratories, A300-140A) followed by
anti–β-actin monoclonal antibody (clone AC-74, A5316,
Sigma-Aldrich) as a control for protein loading. For MEK signaling pathway
analysis, normal human melanocytes and melanoma cells were either untreated or
treated with 100 nM selumetinib (Selleckchem Chemicals, S1008). Cells were
harvested 1, 6, and 24 h later, and cell lysates were subjected to protein blot
analysis in 4–12% Bis-Tris gels (Novex) as described64 . The antibodies used were to
phospho-MEK1/2 pSer217/221 (9121), MEK1/2 (4694), phospho-ERK2 pThr202/Tyr204
(9106), and ERK1/2 (4695), all from Cell Signaling Technology.
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8

Western Blot Protein Analysis

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Western blots were performed as previously described [9 (link), 10 (link)] using the primary antibodies against MKL1 (ab14984) from Abcam, ERα (sc-543), and p-ERK (sc-7383) from Santa Cruz Biotechnology, ERK 1/2 (4695) from Cell signaling technology, and p-mTOR (5536) from Cell Signaling Technology.
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9

Western Blot Analysis of Protein Expression

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Cells were lysed with radioimmunoprecipitation assay buffer (RIPA Bufer, Thermo Scientific) containing protease inhibitors (Complete, Mini; Protease Inhibitor Cocktail Tablets, Roche) and phosphatase inhibitors (PhoStop, Phospatase Inhibitor Cocktail Tablets, Roche) and centrifuged at 13000×g, at 4ºC, for 20 minutes. The protein content of the supernatants was determined with BCA assay system (Pierce). Lysate aliquots (50 μg) were resolved by 8%, 10% or 12% (depending on the protein molecular weight) SDS-PAGE and transferred onto nitrocellulose membranes. After blocking with 5% skimmed milk in PBS containing 0.2% Tween 20 at room temperature for 1 hour, membranes were incubated overnight at 4ºC with the appropriate primary antibody (CAV1 #610059 from BD, FoxO1 #2880, ERK1/2 #4695, phospho-ERK1/2 #4376 from Cell Signaling Technology; CAV3 #sc5310 and Myogenin #sc-12732 from Santa Cruz; MyHC MF 20 from Developmental Studies Hybridoma Bank). Blots were then incubated at room temperature for 1 hour with a horseradish peroxidase–conjugated secondary antibody and the peroxidase activity was detected by enhanced chemiluminescence (Pierce) following the instructions of the manufacturer. Immunodetection of β-actin (#ab49900) from Abcam was used as a loading reference.
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10

Dox Resistance in MCF-7 Breast Cancer Cells

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MCF-7, a human breast carcinoma cell line derived from the pleural effusion metastasis, weas purchased from ATCC (USA). Dox was purchased from Farmitalia (Italy). MCF-7 resistant cells (MCF-7R) were obtained from MCF-7 parental cells by increased Dox treatment. DMEM/F-12, trypsin and Lipofectamine RNAiMAX were from Invitrogen (France). Bovine fetal serum was from Dutscher (France). LRP-1 polyclonal antibody ‘ab92544’ was from Abcam (France). Caspase-7 ‘#9492’, ERK 1/2 ‘#4695’, Phospho-ERK 1/2 ‘#4370’, LAMP-1 ‘#9091’ and P-gp ‘#13342’ antibodies were from Cell Signaling Technology (France). LRP-1 siRNA kit ‘sc-40101’ was purchased from Santa Cruz Biotechnology (USA). Kit ECL was from Amersham (Germany). U0216, a elective inhibitor of MEK-1 and MEK-2, was from Cell Signaling Technology (France). UptiBlue and BCA kit ‘23225’ were from Uptima (Thermofisher, France). CaspACE assay kit ‘G8091’ was from Promega (France). β-actin antibody ‘A5316’, invertase enzyme ‘I9274’ and all other reagents were from Sigma (USA). Histidine-tagged RAP was purified as previously described [41 (link)] and used as an antagonist of LRP-1-dependent endocytosis [41 (link), 42 (link)].
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