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2 protocols using mln4924

1

Generation of Stable U2OS Cell Lines with Inducible Proteins

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The stable U2OS cell lines expressing myc-BirA∗-DCAF, myc-BirA∗-DDB1, and GFP-DDB1 were generated using the Flp-In T-Rex system (Thermo Fisher Scientific) using respectively pGLAP1-myc-BirA∗-DCAF, pGLAP1-myc-BirA∗-DDB1, and pGLAP1-GFP-DDB1 constructions. U2OS Flp-In-Rex (U2OS-FT) cells were maintained at 37 °C, 5% CO2 in Dulbecco’s Modified Eagle Medium (Thermo Fisher Scientific), supplemented with 10% FB essence (Wisent, St John’s), 50 U/ml penicillin/streptomycin, and 10 mM Hepes. U2OS-FT cells were transfected using Lipofectamine LTX (Thermo Fisher Scientific) during 48 h in 6 cm Petri dishes with 4.5 μg of Flp-Recombinase expression vector pOG44 (Thermo Fisher Scientific) and 500 ng of plasmid DNA. Transfected cells were selected for 2 weeks with hygromycin (50 μg/ml, Thermo Fisher Scientific) and blasticidin (10 μg/ml, Wisent). The expression of the cDNA was achieved by adding 10 μg/ml doxycycline (Clontech Laboratories, Mountain View) in the medium for 24 h or 48 h (or not as control). Cells were lysed directly in Laemmli sample buffer, and the extracted proteins were resolved by SDS-PAGE prior to being transferred to a nitrocellulose membrane. Immunoblotting was performed with a BirA∗ antibody (Novus Biologicals #6C4c7, 1:1000 dilution) or GFP (Santa Cruz Sc-9996, 1:1000 dilution). To inhibit cullins, we treated cells 24 h with 10 μM MLN4924 (Cell signaling 85923S).
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2

Cell Line Maintenance and Treatments

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HEK293T (catalog no.: ACC 635; DSMZ), HeLa (American Type Culture Collection CCL-2), HCT116 and HCT116 KO FBXW7 (B. Vogelstein, Johns Hopkins University), U2OS (American Type Culture Collection HTB-96), U2OS Flp-In-T-rex (J.D. Pravin, Ohio State University), and U2OS Tet-Off cyclin E1 (J. Bartek, Karolinska Institute) were maintained in Dulbecco’s modified Eagle’s medium containing 4.5 g/l glucose (Gibco; catalog no.: 41965-039). For U2OS Tet-Off cyclin E1, 2 μg/ml doxycycline (Sigma; catalog no.: D-9891) were added to the cell culture medium. DLD1 and DLD1 KO FBXW7 (B. Vogelstein) were cultivated in RPMI1640 (Sigma; catalog no.: R8758). All media were supplemented with 10% FBS (Gibco; catalog no.: 10270-106) and 1% penicillin/streptomycin (Sigma; catalog no.: P0781). Cell lines were grown in a humidified CO2 incubator at 37 °C and 5% CO2. U2OS Flp-In-T-Rex WDR5 and WDR5 F133A stable cell lines were generated following the manufacturer’s instructions (Life Technologies). Protein expression was induced by addition of 2 μg/ml doxycycline for at least 72 h. GSK3β activity was blocked with 5 μM CHIR-99021 (MedChemExpress; catalog no.: HY-10182) and cullin-RING E3 ubiquitin ligases with 5 μM MLN4924 (Cell Signaling Technology; catalog no.: 85923) for 5 h prior to cell harvest.
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