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5 protocols using secondary antibody conjugated to horseradish peroxidase

1

Western Blot Analysis of TRPC5 in Neurons and Astrocytes

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Membrane proteins from cultured pure neurons and astrocytes were extracted with lysis buffer (20 mM Tris-HCl pH 7.4, 150 mM NaCl, 1 mM EDTA, 0.5% SDS, 2.5 mM sodium pyrophosphate, 1 μM NaVO4, and protease inhibitors). Proteins were separated by 8% SDS-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Millipore). Membranes were probed with antibodies to TRPC5 (Neuromab, 75-104) and β-actin (Sigma, A0560), followed by incubation with the appropriate secondary antibody conjugated to horseradish peroxidase (Thermo Fisher Scientific). Immunoreactivity was visualized using Immunobilon™ Western Chemiluminescent HRP Substrate (Millipore) and the Kodak Image Station 4000MM (Kodak).
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2

Western Blot Analysis of AMPK Phosphorylation

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Cells were treated with 5 µM XeB or vehicle for 1 h and lysed on ice with Cytobuster protein extraction reagent (Merck-Millipore, Burlington, MA, USA) supplemented with protease and phosphatase inhibitors (complete PhosSTOP, Roche, Basilea, Switzerland). The protein quantification was performed by the Bradford assay (ThermoFisher, Carlsbad, CA, USA) according to the manufacturer’s instructions. Protein extracts were separated in 10% SDS-polyacrylamide gels, and transferred to PDVF membranes (Merck-Millipore, Burlington, MA, USA). Then, membranes were blocked in 5% fat-free milk for 1 h at room temperature and incubated overnight at 4 °C with primary antibody 1:1000 phospho-AMPKα Thr172 (Catalog #2531, Cell Signaling Technology, Danvers, MA, USA), 1:1000 rabbit antibody total AMPKα (Catalog #2532, Cell Signaling Technology, Danvers, MA, USA). Then, membranes were incubated for 1 h at room temperature with a secondary antibody conjugated to horseradish peroxidase (ThermoFisher, Carlsbad, CA, USA). Chemiluminescence detection and densitometric analyses were performed with ImageJ software, as described before [24 (link)].
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3

Signaling Pathway Modulation in Cancer

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AICAR, compound C, eosin, haematoxylin, 4′,6‐diamidino‐2‐phenylindole (DAPI), dimethyl sulfoxide (DMSO) and crystal violet were obtained from Sigma‐Aldrich (St. Louis, MO, USA). Simvastatin was purchased from LKT Laboratories, Inc (St. Paul, MN, USA), and pitavastatin calcium was purchased from HL Genomics (Gyeonggi‐Do, Republic of Korea). LY294002 and antibodies against p‐Akt (Ser437), Akt, p‐AMPK (Tyr172), AMPK, p‐FOXO3a (Ser253, Ser413), FOXO3a, PUMA, Caspase‐3, Caspase‐9, PARP, E‐cadherin, N‐cadherin, vimentin, β‐catenin, ZEB1, Snail2 and Lamin B1 were purchased from Cell Signaling Technology (Beverly, MA, USA), and GAPDH was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). A secondary antibody conjugated to horseradish peroxidase was procured from Thermo Fisher Scientific (Rockford, IL, USA).
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4

PTEN and GAPDH Protein Analysis

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CCRCC cells were lysed in buffer containing 50 mM Tris–HCl (pH 7.5), 150 mM NaCl, 0.1% (w/v) SDS, 0.1% (w/v) SDC, 1% (v/v) Nonidet P-40, 5 mM NaF, 1 mM Na3VO4, 2.5 mM Na2HPO4, and protease inhibitor cocktail (Roche Diagnostics, Basel, Switzerland) and tissues were lysed in Pro-prep buffer (Intron, Daejeon, Korea). Equal amounts of proteins were separated by SDS–polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Millipore, Bedford, MA). Membranes were probed with antibodies to PTEN (Cell Signaling, 91885) and GAPDH (sc-20357, Santa Cruz Biotechnology, Inc.), followed by incubation with the appropriate secondary antibody conjugated to horseradish peroxidase (ThermoFisher Scientific, Waltham, MA). Immunoreactivity was visualized using Immunobilon Western Chemiluminescent HRP Substrate (Millipore) and the Amersham Imager 600.
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5

Aflatoxin B1 Cytotoxicity Assay

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The AFB1 used in the study was purchased from Sigma-Aldrich, USA (cat no A6636) and dissolved in dimethyl sulfoxide (DMSO) to a stock concentration of 3200 μM. The AFB1 stock solution was divided into aliquots, wrapped in aluminium foil and stored frozen at −20 °C until used. The AFB1 stock solution was diluted to the desired concentration in normal growth medium when necessary. The foetal bovine serum (FBS) was purchased from Sigma-Aldrich, USA. Dulbecco’s Modified Eagles Medium (DMEM) (high glucose, L-glutamine, sodium pyruvate and 25 mM HEPES) was purchased from Science Cell. Minimum essential medium (MEM) non-essential amino acids was purchased from Sigma Aldrich, USA while penicillin-streptomycin was purchased from Gibco by Invitrogen, UK. Lipofectamine 2000 was purchased from Gibco by Life Technologies, UK (cat no 11668-019). The human recombinant interferon-alpha 2 (rIFN-α2) was purchased from PBL interferon source (cat no 11115-1). The stock solution of the human recombinant interferon-alpha 2 was diluted to working concentration using phosphate buffered saline containing 0.1% bovine serum albumen as a diluent. The STAT1 (cat no PA5-34504) and GAPDH (cat no QE 212271) primary antibodies were purchased from Thermo Scientific, USA. The secondary antibody conjugated to horse-radish peroxidase (cat no 31430) was purchased from Thermo Scientific, USA.
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