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5 protocols using bio scale mini nuvia imac cartridge

1

Purification of Recombinant Tagged Proteins

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The protein expression plasmids with the target cloned in pET30a(+), pMAL-c5X-His, and pGEX-4T3 were transformed into BL21/DE3 pLysS E.coli bacteria (#L1195, Promega, Madison, WI). The recombinant His-, MBP-, Strep-, and GST-tagged proteins were purified as previously described [23 (link),49 (link),87 (link),88 (link)] or purified with Bio-Rad NGC Chromatography System (Bio-Rad Laboratories) using Bio-Scale Mini Nuvia IMAC Cartridges (#7800811, Bio-Rad, CA). The His-tagged NS1-70 was further purified by running through a HiLoad Superdex 200 pg column (#28989335, Cytiva) with Bio-Rad NGC Chromatography System at a flow rate of 0.5 ml/min as previously described [49 (link)].
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2

Purification of Recombinant Proteins from E. coli

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The E. coli host Shuffle® T7 (New England Biolabs, Inc., Ipswich, MA, USA), was transformed with a cloned expression vector. The cells were cultured in 500 mL of LB medium containing 50 μg/mL of ampicillin at 30 °C until the optical density (OD) at 600 nm was 0.5. Proteins were overexpressed by 1 mM isopropyl β-D-1-thiogalactopyranoside (IPTG) treatment at 20 °C. After 5 h of reactions, cells were harvested by centrifugation (3000× g for 20 min). Harvested cells were lysed via sonification in a lysis buffer of 50 mM Tris-HCl, 200 or 300 mM NaCl, and 10% glycerol at pH 7.0. The cell lysates were filtered through a polyether-sulfone syringe filter with a 0.45 μm pore size (Hyundai Micro Co., Ltd., Seoul, Republic of Korea) after centrifugation at 16,000× g for 10 min and purification via Ni-affinity chromatography (Bio-Scale™ Mini Nuvia™ IMAC Cartridges; Bio-Rad Laboratories, Inc., Hercules, CA, USA). The purified samples were concentrated with Centriprep™ (Merck Millipore Ltd., Tullagreen, Carrigtwohill, County Cork, Ireland). Protein samples were further separated by their size through size exclusion chromatography (SEC) with a Superdex™ 200 Increase 10/300 GL column (GE Healthcare, Uppsala, Sweden). After SEC, eluted fractions of the expected peak were pooled and concentrated with Centriprep™ (Merck Millipore Ltd., Tullagreen, Carrigtwohill, County Cork, Ireland).
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3

Purification of His-tagged Proteins

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The supernatant after cell disruption containing recombinant His-tagged protein was supplemented with 40 mM Imidazole and subsequently loaded onto a Ni2+-loaded HiTrap 5 ml chelating HP column (GE Healthcare) or Ni2+-loaded Bio-Scale mini Nuvia IMAC cartridge (BioRad) pre-equilibrated in buffer A (20 mM HEPES pH 7.5, 500 mM NaCl, 1 mM MgCl2, 1 mM ß-Me for CbFic2 versions and FRET control constructs; 20 mM HEPES pH 7.5, 500 mM NaCl, 1 mM ß-Me for TS-H3 peptides and GST-H3 peptides). The column was washed with 40 mM imidazole and His-tagged protein was eluted using a 5 ml fractional gradient of 40–350 mM imidazole over 20 column volumes. Protein-containing fractions were analyzed by SDS PAGE and pooled for TEV protease cleavage, if applicable. For GST-H3 peptides, protein-containing fractions were analyzed by SDS PAGE, combined, and concentrated as well as buffer exchanged to 20 mM HEPES pH 7.5, 100 mM NaCl, 2 mM DTT using Amicon Ultra centrifugal filter units (Merck Millipore), before being subjected to TEV cleavage.
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4

Purification of recombinant SasG protein

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S. aureus LAC expressing a secreted recombinant His6-tagged SasG (rSasG) from a pHC90 plasmid was inoculated 1:100 from an overnight culture into 500 ml of tryptic soy broth and grown for 16 h with 100 ng/ml of anhydrotetracycline as an inducer. The spent medium was harvested by centrifugation and filtration through a 0.2 μl filter, and concentrated with a 100 kDA cut-off Ultracell ultrafiltration disc (Millipore) to enrich for the rSasG (≈200 kDa). The protein was further purified on the Ni-charged Bio-Scale Mini Nuvia IMAC Cartridge (Bio-Rad) according to manufacturer’s protocol, dialyzed into PBS, and stored at -80°C.
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5

Biochemical Characterization of Bacterial Enzymes

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Escherichia coli DH5α chemically competent cells were from Invitrogen (Carlsbad, CA). Genomic DNAs of Bacteroides fragilis NCTC 9343 (ATCC#25285), Bacteroides thetaiotaomicron VPI-5482 (ATCC#2914D-5), and Clostridium perfringens (ATCC#13124) were from American Type Culture Collection (ATCC, Manassas, VA, USA). Expression vector pET15b was from Novagen (EMD Biosciences Inc., Madison, WI, USA). Bio-Scale Mini Nuvia IMAC Cartridge and Bio-Scale™ Mini Bio-Gel® P-6 Desalting Cartridge were from Bio-Rad (Hercules, CA, USA). AccuPrep® PCR/Gel purification kit was from BIONEER Corporation. GeneJET plasmid spin kit, 1 kb DNA ladder, pre-stained protein ladder and FastDigest BamHI and XhoI restriction enzymes were from Fisher Scientific (Tustin, CA, USA). Phusion® HF DNA polymerase, Q5® site-directed mutagenesis kit, and T4 DNA ligase were from New England Biolabs Inc. (Beverly, MA, USA). 4-Methylumbelliferyl 2-acetamido-2-deoxy-α-D-glucopyranoside (GlcNAcαMU, 1) was from Toronto Research Chemicals (North York, Canada) and α-GlcNAc-terminated heparosan oligosaccharides 2–6 were synthesized previously using an efficient chemoenzymatic method (Na et al. 2020 (link)).
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