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Hybrid cell count module

Manufactured by Keyence
Sourced in Japan

The Hybrid Cell Count module is a compact and versatile device designed for cell counting and analysis. It utilizes a combination of optical and impedance-based technologies to accurately determine cell concentration and viability. The module provides precise measurements of cell count, cell size, and other key parameters, enabling efficient monitoring and analysis of cell cultures.

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8 protocols using hybrid cell count module

1

Clonogenic Assay of A375/TxR Cells

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In the case of the clonogenic assay, A375/TxR cells were seeded in six-well plates at a very low concentration (1000 cells/well). When each single cell had split into four cells in each well, cells were treated with 5m or 5t at different concentrations (0.5, 1, and 2 nM) or media only and incubated for 7 days. The medium was replaced with the fresh drug once during the treatment. Cells were then fixed with cold methanol and stained with 0.5% crystal violet. Colony area density was quantified using the Keyence Hybrid Cell Count module.
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2

Quantifying Cartilage Collagen II in 3D and In Vivo

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Sections of in vitro 3D pellets and in vivo tissues were viewed with a BZ‐X800 microscope and then analyzed with BZ‐X800 Analyzer software (KEYENCE). High‐resolution whole images of in vivo tissues were created by seamlessly stitching 30 images at 10× magnification using Multistack Module (KEYENCE). The COL II‐positive area (μm2) was delineated and quantified using Hybrid Cell Count Module (KEYENCE), and the ratio to whole tissue area (WTA) (μm2) was calculated.
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3

SUMO2/3-CnA Protein Interaction Analysis

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Fixed cells were blocked and incubated with two primary antibodies against SUMO2/3 (Abcam, 1:1000, ms) and CnA (Upstate, 1:50, rb). Species-specific probes were added and after annealing and ligation of these probes, an amplification and labeling step was performed that labels probes in close proximity with a green-emitting fluorophore. Green dots within a cell indicate less than 30–40 nm distance between proteins and thus imply a direct protein-protein interaction. Quantitative analysis was carried out utilizing Keyence’s Hybrid Cell Count module as described in detail in supplementary methods. In brief, nuclei were counted and PLA-fluorescence signal extracted to calculate the percentage of positively stained nuclei.
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4

Quantifying Tumor-Infiltrating Immune Cells

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For the quantification of tumor-infiltrating CD3+, CD8+, and CD163+ immune cell density, 41 images covering 11.04 mm2 tissue area were obtained from each CRC slide using an All-in-One Microscope (BZ-X700, KEYENCE; Fig. 1). Four representative region images consisting of 36 views (4 regions × 9 views, total area 9.07 mm2) of the central tumor area were captured, and five representative region images (total area 1.97 mm2) of the invasive margin were captured (Fig. 1B). Tumor-infiltrating CD3+, CD8+, and CD163+ immune cell densities in the central tumor and invasive margins were determined using the Hybrid Cell Count Module (KEYENCE) as a semi-automatic image analysis software. The number of tumor-infiltrating immune cells was divided by the total area (mm2) to calculate the cell density per mm2.
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5

Glioblastoma Spheroid Assay Protocol

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T98G and A172 cells were cultured in spheroid culture medium containing 1.6% (w/v) methylcellulose (Nacalai Tesque). Fresh aliquots of MACS NeuroBrew‐21, EGF and bFGF were added at day 3. After 6 days in culture, the living cells were stained with Calcein‐AM (Dojindo) and counted using hybrid cell count module (Keyence). In some experiments, cells were treated with Strictinin (Nagara Science Co., Ltd.), a Ror1 inhibitor. The numbers and sizes of spheroids formed were measured, and spheroids were classified into small (<1000 μm2), medium (1001–2000 μm2), and large (>2001 μm2) according to their sizes.
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6

Immunofluorescent Neuronal Imaging and Analysis

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Following fixation (4% paraformaldehyde), blocking (1% BSA), and washing, neurons were labeled with the following primary antibodies (1:100, overnight, 4 °C): β Tubulin (Sigma; T8578), BAG1 (Santa Cruz; SC376848), BAG3 (Proteintech; 105991AP) MAP2 (Cell Signaling; 4542). Alexa Fluor®secondary antibodies (1:500) (ThermoFisher, Waltham, MA) and VectaShield with DAPI medium (Vector Laboratories, Burlingame, CA) were used for labeling and mounting, respectively. Imaging utilized a fluorescence microscope (BZ-X710; Keyence, Osaka, Osaka, Japan) and image processing employed the Hybrid Cell Count module within the BZ Image Analyzer software (Keyence) to obtain optical density measurements expressed in μM per cell.
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7

Quantifying Metastatic Burden in Lung and Liver

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Fixed lung, liver, and tumor tissues were paraffin-embedded and cut into 4 μm thick sections. Histological processing of specimens was carried out by dewaxing, staining with H&E, rehydrating, and sealing to attach to glass slides. Anti-mitochondria IHC staining to visualize metastasis was performed according to previously published protocols.12 (link) Briefly, lung and liver slides were stained with the anti-human mitochondria antibody (AbCAM, Cambridge, MA, Cat# ab92824) with a 1:1000 dilution overnight after blocking with 10% of horse serum. The following day, the slides were incubated with the secondary anti-mouse antibody, visualized with the DAB agent (Sigma-Aldrich, Cat# D5637), counterstained in Gill’s hematoxylin, and mounted with Permount mounting media. Representative tissue images were captured using a Keyence BZ-X700 microscope. Representative whole lung or liver images were digitally scanned using a Pannoramic FLASH III system (3D Histech). Lung or liver metastatic burden of each mouse was quantified by measuring the percentage of the metastasis area in 3–4 representative fields per H&E staining tissue with the Keyence Hybrid Cell Count module.
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8

Immunohistochemical Analysis of Tumor Samples

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Fixed tumors and organs were embedded in paraffin and unstained slides were prepared for immunostaining or stained with H&E. IHC staining was performed as previously described (21 (link)). Primary antibodies included rabbit anti-Ki67 (1:400), rabbit anti-CD31 (1:100) (#9027; #77699, Cell Signaling Technology), rabbit anti-cleaved PARP (1:50) and rabbit anti-cleaved-caspase-3 (1:200), detected by a biotinylated horse anti-rabbit IgG antibody (BA-1100, Vector Laboratories Inc., Burlingame, CA) secondary antibody. Anti-human-specific mitochondria IHC staining (AbCAM, Cambridge, MA, cat# ab92824) was performed at a 1:1000 dilution to visualize metastases. All slides were developed with DAB Impact (Vector Labs, Burlingame, CA), counterstained in Gill’s hematoxylin (Vector Labs) and mounted with Cytoseal XYL mounting media. Tissue images were acquired with a Keyence BZ-X700 microscope. Quantification of metastatic burden was performed by digital scanning of whole stained slides using a Pannoramic FLASH III system (3D Histech), followed by manual counting of metastatic lesions present in the tissue section. Quantification of Ki67-, CD31-, cleaved-PARP- and cleaved-caspase-3-positive tumor cells was performed by calculating the area of positive cells in 4–5 representative fields per section using the Keyence Hybrid Cell Count module.
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