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743 protocols using silica gel 60 f254

1

Purification of Tacrolimus from Plant Extract

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The ethyl acetate extract was subjected to column chromatography (2.0×60 cm) on a pre-packed silica gel column (80 g silica gel 60 F254, Merck, Germany). The elution was performed with a gradient of chloroform-methanol (90:10) to pure methanol (v/v). Fractions were pooled into major fractions based on their thin-layer chromatography profiles (TLC, silica gel 60 F254, Merck, Germany) compared with tacrolimus standard. TLC analysis of the fractions with vanillin/ sulfuric acid (2%) and heating at 100°C, allowed the constitution of four fractions. The tacrolimus subfraction was further purified by using chromatotron (Harrison Research, USA) (silica gel 60 F254, layer thickness 2 mm, Merck, Germany). The elution was performed with a mobile phase composed of chloroform-methanol (98:2, v/v). The TLC analysis with an elution system of chloroform-methanol (90:10) showed a pure violet spot with R f value of 0.61 which was attributed to tacrolimus.
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2

Quantitative TLC Analysis Workflow

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Densitometer: Camag (Muttenz, Switzerland) TLC Scanner 3 with the winCATS 1.4.2 software (Camag, Muttenz, Switzerland). IKA Ultra-Turrax® Tube Drive Workstation (IKA Poland Sp. z o.o., Warsaw, Poland) with BMT-20-S Tube for grinding with balls of stainless steel. NP-TLC plates: 10 × 20 cm glass plates precoated with 0.20-mm layers of silica gel 60F254 (E. Merck, Darmstadt, Germany, # 1.05554); 10 × 20 cm aluminum plates precoated with 0.20 mm layers of silica gel 60F254 (E. Merck, Germany, # 1.05570). The 5 μL Camag micropipettes (Muttenz, Switzerland) were used to apply the solutions to the plates.
Chromatographic chamber: a classical chamber for 20 × 20 cm plates (#0.222.5259, Camag, Muttenz, Switzerland), and twin-trough chamber for 20 × 10 cm plates (#0.222.5254, Camag, Muttenz, Switzerland).
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3

Silica Gel Column Purification

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The reaction progress and purity of products were monitored by TLC using aluminum sheets covered with silica gel 60 F254 (Merck). UV light (254 nm) was used as the detection method. Reaction mixtures were separated using a classical column (silica gel 60, 0.063–0.200 mm, Merck) or preparative thin layer chromatography (PLC plates, silica gel 60F254, 1 mm, 20 × 20 cm size, Merck). Reagent grade solvents were used.
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4

Chromatographic Analysis of Nucleotides and Phosphate Release

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Two chromatographic systems were used. High-performance thin layer chromatography (HPTLC) plates (Merk, Silica gel 60 F254) were used for TLC analysis of nucleotides when reaction mixes were treated with hSCAN-1. One or two μl of sample was spotted on the plate which was developed by ascending chromatography with n-propanol:ethyl acetate:water (7:1:4). Plates were laid flat and allowed to air dry at room temperature. Radioactivity was visualized using either a Phoshorimager or by exposing the plates to X-ray film. For visualization of UV absorbing compounds, the plates were placed under a UV lamp (λ = 254 nm), the UV absorbing regions were marked, and a photograph of the plate was taken. For analysis of 32Pi release from 32P-glycogen, polyethyleneimine (PEI) cellulose plates (Merck, 1.05725.0001) were developed by ascending chromatography with 1M acetic acid: 3M LiCl (9:1). Plates were air dried and imaged as described above.
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5

Detailed Analytical Techniques for Chemical Synthesis

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Unless otherwise noted, all materials used in this study were purchased from commercial suppliers and used without further purification. Unless otherwise noted, work-up and purification procedures were performed with reagent-grade solvents under air. Analytical thin-layer chromatography (TLC) was performed using E. Merk silica gel 60 F254 precoated plates (0.25 mm). The developed chromatogram was analyzed with a UV lamp (254 nm) and ethanolic ninhydrin. Flash column chromatography was performed with an Isolera Spektra instrument equipped with a Biotage® Sfär Silica HC D 10 g or Sfär Silica HC D 50 g cartridge. Preparative high performance liquid chromatography (HPLC) was performed on a Prominence HPLC system (Shimadzu) with a 5C18-AR-II column (#38150-41, Nacalai tesque). High-resolution mass spectrometry (HRMS) was measured using a Bruker micrOTOF II (ESI). Nuclear magnetic resonance (NMR) spectra were recorded on a JEOL ECS400 (1H 400 MHz, 13C 100 MHz) spectrometer. Chemical shifts for 1H NMR are expressed in parts per million (ppm) relative to CHCl3 (δ 7.26 ppm) in CDCl3, HOD (δ 4.79 ppm) in D2O. Chemical shifts for 13C NMR are expressed in ppm relative to CDCl3 (δ 77.19 ppm) in CDCl3. Data are reported as follows: chemical shift, multiplicity (s = singlet, d = doublet, t = triplet, m = multiplet), coupling constant (Hz), and integration.
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6

Quantification of Radiolabeled Verapamil Metabolites

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Parent fraction
and polar radioactive metabolites of (R)-[11C]verapamil in arterial blood samples were determined following the
tracer injection (16, 40, and 64 s and 6, 10, 30, 45, 60, 75, and
90 min). A 0.2 mL volume of ethanol was added to the 0.1 mL of plasma
fraction to deproteinize the samples. After centrifugation (13,400
rpm,12,100g, for 90 s), the samples were analyzed
using thin-layer chromatography plates (silica gel 60 F254, Merk)
with a mobile phase of ethyl acetate/trimethylamine (9/1). The parent
(Rf = 0.55) and polar-metabolized (Rf = 0.0, origin) fractions were
assessed using a phosphor imaging plate and a bioimaging analyzer
(FLA-7000, Fuji Film).
The percentage of the polar radio-metabolites
in plasma was calculated for each animal by fitting a single exponential
equation to the values obtained from the metabolite analysis, using
an iterative nonlinear least-squares approach (GraphPad Prism version
7.02, California, USA): Y = Y0 × exp(−Ke × X),39 (link) where Y is the percentage of the parent tracer at different time points, Y0 is the intercept, Ke is the first-order elimination constant, and X is
the time.
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7

Characterization of Chemical Compounds

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The characteristics of compounds were evaluated by melting points (MPs) and nuclear magnetic resonance (NMR). MPs were measured in open tubes using a Büchi apparatus and were not corrected. 1H NMR spectra was recorded with a Varian Gemin 200 MHz and a Varian Mercuri 400 MHz spectrometer (δ in parts per million and J in Hz). D2O was added to confirm the exchangeable protons. A Varian Mercuri 400 MHz spectrometer was used to obtain the 31P NMR spectra at room temperature. Elemental analyses were performed on an elemental analyzer (Model EA 1108, Fisons) and the theoretical values were limited within ±0.4%. Exact mass analyses were performed on a Hewlett Packard 1100 series, quadrupole electrospray ionization-mass spectrometer (ESI-MS, Hewlett Packard, Waldbronn, Germany). Thin-layer chromatography (TLC) analyses were performed on silica-coated TLC plates (Silica gel 60 F-254, Merk, Darmstadt, Germany). Silica gel 60 (Merk) was used for column chromatography, while Sephadex DEAE A-25 (Sigma, St. Louis, MO, USA) was used for ionic exchange chromatography.
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8

Synthesis and Characterization of Nanoformulations

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Melting points were determined on open glass capillaries using Gallenkamp apparatus and are uncorrected. Infrared spectra were measured on a Shimadzu FT-IR 8400s infrared spectrophotometer (cm−1) using KBr disks, Faculty of Pharmacy, Cairo University, Cairo, Egypt. 1H and 13C-NMR spectra were determined in DMSO-d6 with Bruker Avance-400 spectrometer operating at 400 MHz and 100 MHz, respectively, at Applied Nucleic Acid Research Centre (ANARC), Faculty of Science, Zagazig University, Zagazig, Egypt. TLC was performed on 2.5 × 5 cm aluminum plates coated with silicagel 60F-254 (Merk, Germany) in an appropriate solvent. Span 60 was purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Sodium taurocholate (STC) and sodium deoxycholate (SDC) were purchased from BASF Co. (Florham Park, NJ, USA). 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N [methoxy(polyethylene glycol)-2000] (DSPE–mPEG-2000) was a generous gift from Lipoid GmbH (Ludwigshafen, Germany). Cholesterol was obtained from ITX Biomedicals (Santa Ana, CA, USA). Sodium hydroxide, potassium dihydrogen orthophosphate and absolute ethanol were purchased from El-Nasr Chemical Co., Cairo, Egypt. The Spectra/PoreVR dialysis membrane (12,000–14,000 molecular weight cut off) was purchased from Spectrum Laboratories Inc., Los Angeles, CA, USA. All chemicals and solvents were of HPLC grade and were used as received.
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9

Synthesis of Organic Compounds Using Standard Techniques

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All manipulations and reactions were performed using standard Schlenk techniques. The starting materials, reagents, and solvents were obtained from commercial suppliers and were used without further purification. Thin-layer chromatography was performed with Merk silica gel 60 F254 pre-coated glass sheets. Column chromatography was performed on Biotage Isolera One™ flash chromatography system and the eluting solvents are noted as a mixed solvent with given volume-to-volume ratios or as a percentage. Uncorrected melting points were measured using Optimelt Automated Melting Point System (Stanford Research Systems). 1H and 13C NMR were measured on a 400 MHz Bruker Avance or a 500 MHz Agilent 500 NMR spectrometer. Chemical shifts and coupling constants are presented in parts per million (ppm) relative to Me4Si and hertz (Hz), respectively, and the following abbreviations are used: s, singlet; d, doublet; dd, a doublet of doublets; t, triplet; m, multiplet. High-resolution mass spectra were performed on Waters ACQUITY UPLC BEH C18 1.7µ−Q-TOF SYNAPT G2-Si High Definition Mass Spectrometry.
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10

Identification of Brown Pigment Metabolites

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The brown pigment degradation products were identified by hydrolysis of the pigment as described by Ellis and Griffiths 197441 (link) with slight modifications. Five milligrams of the dried pure brown pigment was added to 0.5 g of KOH in a 5 ml tightly sealed screw cap glass tube. The mixture was brought to boil on hot water bath (1 h) and the dark color residue thus formed was allowed to cool. To the dried residue 1.5 ml, distilled water was added and acidified (pH 2) with concentrated HCl and metabolites were extracted with diethyl ether and dried under rota evaporator (Heidolph, Germany) finally dissolved in HPLC grade methanol. To detect the indoles, the hydrolyzed fraction was run on TLC (Merk, Silica gel 60 F254, 20×10 cm, 0.2 mm,) using a mixture of Chloroform: Methanol: Glacial acetic acid (9: 0.95: 0.05 v/v) as a solvent system and TLC plate was developed using indole-specific TLC reagent prepared as described by Ehmann et al.42 (link). Alkaline hydrogen peroxide oxidation of brown pigment was carriedout according to Ito et al. 2011 and LCMS analysis was performed as described in HRLC-MS.
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