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19 protocols using doxorubicin d1515

1

Synthesis and Characterization of DDP Prodrug

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DDP (P3494) and doxorubicin (D1515) were purchased from Sigma. Docetaxel (T1034) was purchased from TargetMol. Carboplatin (C805203) was purchased from Macklin, ERK inhibitor SCH772984 and Rac1 inhibitor NCS23766 was from Selleck.
The DDP prodrug was synthesized according previous report51 (link), by using the reaction between cis, trans, cis-[PtCl2(OH)2(NH3)2], and sebacic anhydride. The structure of this DDP prodrug was analyzed by proton nuclear magnetic resonance (HNMR) to confirm successful synthesis (Supplementary Fig. 8). Details of the drugs including their targets and concentrations noted in the figure legends.
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2

Western Blot Antibody Panel for Apoptosis Signaling

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Anti‐poly (ADP‐ribose) polymerase (PARP, 9532), anti‐caspase 3 (9662), anti‐caspase 7 (12827), anti‐phospho‐p38 (9211), anti‐p38 (8690), anti‐phospho‐JNK (9251), anti‐JNK (9252), anti‐p27 (3686), anti‐Noxa (14766), anti‐PUMA (12450), anti‐mouse (7076), and anti‐rabbit (7074) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA); anti‐p21 (sc‐53870), anti‐p53 (sc‐126), and anti‐α tubulin (10D8) (sc‐53646) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
Delanzomib (CEP‐18770) was purchased from LC Laboratories (Woburn, MA, USA). Doxorubicin (D1515) was purchased from Sigma‐Aldrich Corp. (St. Louis, MO, USA).
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3

In Vitro Cytotoxicity Evaluation

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All cell lines were purchased from Nawah Scientific Company (Almokattam Mall, Cairo, Egypt) except A2780 and A2780CP, which were a kind gift from Prof. Jan Brabek (BIOCEV, Vestec u Prahy, Czech Republic). Cells were grown in DMEM medium (BioWhittaker™, Walkersville, MD, USA) or RMPI-1640 supplemented with bovine serum albumin (10%, Life Science Group L, Bedford, UK, Cat No: S-001B-BR) and with 100 IU/mL penicillin/streptomycin (100 µg/mL) (Lonza, Walkersville, MD, USA, 17-602E). Doxorubicin (D1515), sorafenib (SML2653), and JS-K (J4137) were obtained from Sigma-Aldrich, solubilized in DMSO, and kept at −20 °C as a stock solution. DAF-FM™ diacetate was purchased from Invitrogen (Cat. No. D-23844, Waltham, MA, USA). The tested compounds were prepared in dimethyl sulfoxide (10 mM stock) (DMSO Cat. No. 20385.02, Serva, Heidelberg, Germany) and stored at −20 °C.
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4

Investigating SIRT6 in Osteosarcoma Cell Lines

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This study used two human osteosarcoma cell lines, U2OS (Korean Cell Line Bank, Seoul, Korea) and KHOS/NP. KHOS/NP cells were kindly provided by Chang-Bae Kong (Department of Orthopedic Surgery, Korea Institute of Radiological and Medical Science). The cells were cultured in Dulbecco’s modified Eagle’s medium (Gibco BRL, Gaithersburg, MD) containing 10% FBS (Gibco BRL) and 1% penicillin/streptomycin (100 U/mL) at 37 °C in a humidified incubator under 5% CO2. This study used doxorubicin (D1515, Sigma, St. Louis, MO), KU-55,933, an ATM inhibitor, (SML1109, Sigma), and olaparib, a PARP inhibitor (SC-302,017, Santa Cruz Biotechnology, Santa Cruz, CA). The vector for SIRT6-specific shRNA was purchased from GenePharma Co. (GenePharma, Shanghai, China). The SIRT6 duplex had the sense and antisense sequences 5′-CACCGCTACGTTGACGAGGTCATGATTCAAGAGATCATGACCTCGTCAACGTAGCTTTTTTG-3′ and 5′-GATCCAAAAAAGCTACGTTGACGAGGTCATGATCTCTTGAATCATGACCTCGTCAACGTAGC-3′, respectively [16 (link)]. A pFLAG-CMV-2 plasmid vector was used as a control vector. The vector overexpressing wild-type SIRT6 (pFLAG2_SIRT6) was synthesized by Cosmogenetech Co. Ltd. (Cosmogenetech Co. Ltd, Seoul, Korea) [16 (link)]. Transfection was performed using Lipofectamine 3000 (Invitrogen, Carlsbad, CA).
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5

Chromatographic Analysis Reference Compounds

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p-hydroxycinnamic acid, a reference standard for chromatographic analysis, was purchased from ChemFaces (Wuhan, Hubei, China). The purity of the p-hydroxycinnamic acid was ≥99.1% for high-performance liquid chromatography (HPLC). HPLC grad acetonitrile and analytical grad formic acid were purchased from JT Baker chemicals (Center Valley, PA, USA) and Wako chemicals (Osaka, Japan), respectively. Deionized distilled ultra-pure water was produced by Millipore RiQs & Milli-Q-Gradient water purification system (Millipore, Bedford, MA, USA). Docetaxel was purchased from LC laboratories (D1000, Woburn, MA, USA). CPT11 (camptothecin, C9911) and doxorubicin (D1515) were obtained from Sigma (St. Louis, MO, USA).
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6

SIRT3 Expression Vector and Anticancer Drugs

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The plenti6-SIRT3 expression vector was cloned as previously reported [17 (link)]. The pCMV6-XL5-GSTP1 expression vector (SC119655) was obtained from Origene (USA). Anti-SIRT3 (#2627), Anti-PARP (#9542), Anti-GSTP1 (#3369), Anti-c-Jun (#9165), Anti-phospho-c-Jun (#2361), Anti-phospho-JNK (#9251), Anti-Bim (#2933), Anti-Bax (#5023), Anti-Caspase 9(#9502) antibodies were obtained from Cell Signaling Technology (USA). Anti-GAPDH (sc-365062), Anti-JNK (sc-571) and Anti-IgG (sc-66931) antibodies were obtained from Santa Cruz Biotechnology (USA). Doxorubicin (D1515) and cisplatin (P4394) were obtained from Sigma-Aldrich (USA), epirubicin (56390-09-1) was obtained from Cayman Chemical (USA), Sorafenib (S7397) was obtained from Selleckchem (USA). JNK inhibitor SP600125 (S5567) was obtained from Sigma-Aldrich (USA).
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7

Doxorubicin Treatment Protocol

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Doxorubicin (D1515) was purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany) and resuspended in PBS. Cells were treated with 0.1 µg/mL.
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8

Evaluating Combination Chemotherapy Synergy in Osteosarcoma

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Cell viability of osteosarcoma cells treated with chemotherapy and decitabine was assessed using MTT assay according to previously report [15] (link). Osteosarcoma cells were seeded in 96-well tissue culture plates (5 × 103 cells/100 μl freshly prepared culture media/well) and incubated at 37 °C with 5% CO2 overnight. Osteosarcoma cells were treated with decitabine (Selleckchem, Houston, TX, USA) at concentrations of 0, 0.01, 0.1, 1, 10, and 100 μM for 72 h. The cells were further treated with clinically achievable concentrations of decitabine in combination with doxorubicin (D1515; Sigma, St. Louis, MO, USA) or cisplatin (P4394; Sigma, St. Louis, MO, USA) for 72 h. After a 72-hour incubation, the culture medium was removed, and 100 μl of fresh medium containing 5 mg/ml of MTT solution was added to each well which were then incubated for 2 h at 37 °C. The MTT-formazan crystal had been dissolved in 100 μl of dimethyl sulfoxide with vigorous mixing. Finally, a spectrophotometer was used to measure absorbance at 550 nm. IC50 values were calculated by performing nonlinear regression analysis using GraphPad Prism version 8.0 (GraphPad Software, Inc., La Jolla, CA, USA).
To evaluate the synergism of the combination drug treatment, we used a reference model named zero interaction potency (ZIP) [18] (link). Synergy score values were calculated using SynergyFinder software [19] (link).
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9

Zygote DNA Replication and Transcription Inhibition

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To inhibit DNA replication and transcription in 1-cell stage zygotes, zygotes were transferred to KSOM containing 100 μM DRB (D1916, Sigma, Livonia, MI, USA), 1 μM triptolide (T3652, Sigma, Livonia, MI, USA), or 2 μg/mL aphidicolin (84958, Sigma, Livonia, MI, USA) between 4 hpi and 10 hpi. To induce DNA damage, zygotes were transferred to KSOM containing 5 µM cisplatin (P4394, Sigma, Livonia, MI, USA) and 200 nM doxorubicin (D1515, Sigma, Livonia, MI, USA) at 4 hpi and 12 hpi. After several washing steps, inhibitor-treated zygotes were fixed with 4% PFA and subjected to immunofluorescence analysis. Control embryos were cultured in inhibitor-free KSOM medium containing the appropriate amount of dimethyl sulfoxide (DMSO), a solvent used for the preparation of inhibitors.
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10

Doxorubicin and Kirenol Cytotoxicity Assay

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For our sample, we purchased doxorubicin (D1515) and kirenol (52659-56-0) from Sigma-Aldrich Co. (St. Louis, MO, USA). A terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) staining kit (Roche, cat. no. 11684817910), antibodies against pAKT (# 44-621G), AKT (# 44-609G), pPI3K (#PA5-104853), PI3K (# PA5-29220), BCL2 (# PA5-27094), PARP (PA5-16452), HO-1 (# PA5-77833), NQO1 (# PA5-82294), pNrf2 (# PA5-105664), β-actin (# PA5-78716), and Lamin B1 (# PA5-19468), ANP (# 711569), MMP9 (PA5-13199), MMP2 (PA5-85197), and rhodamine phalloidin (R415) were sourced from Invitrogen, Thermo Fisher Scientific, Inc. (Waltham, MA, USA). Furthermore, we purchased anti-cleaved caspase-3 (ab32042) and Anti-BNP antibody (ab19645) from Abcam (Branford, CT, USA) and Lipofectamine 2000 (11668027) and Nrf2 siRNA from Thermo Fisher Scientific, Inc. (Waltham, MA, USA). We also procured 3-nitrotyrosine (3-NT, 1:3000 dilutions, Millipore, Billerica, MA), 4-hydroxy-2-nonenal (4-HNE, Alpha Diagnostic International, San Antonio, TX, USA), and plasminogen activator inhibitor-1 (PAI-1, BD Biosciences, San Jose, CA, USA).
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