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96 protocols using anti p akt

1

Detailed Protein Analysis Methodology

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Chemicals and drugs of the purest available grade including NAC were provided by Sigma Chemical Co. (St. Louis, MO, USA). Primary antibodies anti-P-AKT (reacting with Ser473), anti-AKT, anti-Insulin-receptor (anti-IR), anti-fructokinase (anti-fructokinase), anti-glutathione-peroxidase (anti-GPx), and anti-glutathione reductase (anti-GR) were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA; catalog number 6040S, 9272,sc-711, sc-50029, sc-133160, and sc-133245, respectively). Anti-COX-2 from CAYMAN Laboratories (Ann Arbor, MI, USA catalog number 160106), anti-iNOS, and anti-eNOS were obtained from Sigma (St. Louis, MO, USA; catalog number N7782). Anti-P-eNOS (Ser 1177) was provided by Cell Signaling Laboratory (Danvers, MA, USA; catalog number N3893); anti-glucokinase antibody (sheep anti-GST-glucokinase fusion protein antibody) was kindly provided by Dr. Mark Magnusson (Vanderbilt University, TN, USA). This antibody, another from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA; glucokinase-N-19: sc:1980), and anti-GAPDH from Millipore (Carlsbad, CA, USA; catalog number 92590) were also provided. Finally, a secondary antibody anti-rabbit IgG Peroxidase (developed in goats) was obtained from Sigma (St. Louis, MO, USA; catalog number A9169).
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2

Western Blotting of Hep-2 Cell Lysates

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Western blotting was performed as previous reported [36 (link), 37 (link)]. Briefly, Hep-2 cells were grown in the mid-log phase, washed with phosphate buffered saline and lysed for 30 min on ice. The lysis buffer with pH 6.8 contained 10% glycerol, 5% 2-mercaptoethanol, 2% sodium dodecyl sulfate (SDS), 62.5 mmol/L Tris-HCl. The SDS–PAGE analysis was performed and membranes were incubated overnight at 4°C with antibodies directed against the indicated proteins. The antibodies were obtained from the following companies: anti-TrkB, anti-β-actin, anti-p-Akt, anti-cyclin D1, anti-p-s-Src and anti-c-Src were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti-RUNX3 and anti-Keap1 were purchased from Cell Signaling Technology (Danvers, MA, USA); anti-E-cadherin, anti-N-cadherin, anti-vimentin, anti-Twist-1 and anti-Twist-2 were purchased from BD Biosciences (San Jose, CA, USA). Membranes were washed, incubated with the appropriate secondary antibodies and exposed with the ECL chemiluminescent substrate kit (Pierce, Rockford, IL, USA). Images were analyzed with ImagePro (Media Cybernetics, Bethesda, MD, USA) and densitometry data were analyzed by using either conventional Student’s t-test. Results are reported as mean ± SD. A P-value <0.05 was considered significant and all were two-tailed.
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3

Western Blot Protein Analysis

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Detection of pAKT, pHER2, caspase-9 activation and PARP cleavage was performed by Western blot according to standard procedures [18 (link)]. The primary antibodies were as follows: anti-caspase-9, anti-PARP and anti-pAKT were from Santa Cruz Biotechnology (Santa Cruz, CA), anti-pHER2 from Cell Signaling (Danvers, MA), and anti-β-actin from Sigma (St. Louis, MO).
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4

Protein Extraction and Western Blotting

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A total protein extraction kit (Millipore, Billerica, MA, United States) was used to obtain total protein from atrial tissues. BCA working solution (Thermo Fisher Scientific, MA, United States) was used to determine protein concentrations. Bromophenol blue was added, and the samples were boiled to denature the protein. Proteins were then separated by SDS-PAGE gel electrophoresis and transferred to polyvinylidene fluoride membranes. Membranes were blocked with 5% skim milk powder for 1.5 h and then incubated overnight at 4°C with the following primary antibodies: anti-NPR-A [1:1000], anti-VASP [1:1000], anti-p-VASP [(Ser 239) 1:1000], anti-Akt [1:1000], anti-p-Akt [(Thr 308) 1:1000], anti-GSK-3β [1:1000], anti-p-GSK-3β [ (Ser 9) 1:1000], and anti-β-actin [1:5000]; all from Santa Cruz Biotechnology, Santa Cruz (CA, United States). The membranes were then washed with TBST and incubated with HRP-secondary antibodies at room temperature for 1.5 h. Finally, images were acquired using enhanced chemiluminescence solution.
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5

Investigating SKA1 and Apoptosis Pathways

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TRIzol reagent and Lipofectamine 2000 were purchased from Invitrogen (Carlsbad, CA, USA). The First Strand cDNA Synthesis kit and SYBR Premix Taq were from Takara (Dalian, Liaoning, China). 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), bromodeoxyuridine (BrdU) and the anti-BrdU antibody were purchased from Sigma (St. Louis, MO, USA). DAPI, BCA protein assay and ECL Plus kits were obtained from Beyotime Institute of Biotechnology (Beijing, China). BD BioCoat Matrigel invasion chambers were purchased from BD Biosciences (San Jose, CA, USA).
The primary antibodies against human SKA1 and cleaved caspase-3 were obtained from Abcam (Cambridge, MA, USA). Anti-Bcl-2, anti-Bax, anti-p-ERK1/2, anti-ERK1/2, anti-p-Akt, anti-Akt, anti-p21, anti-cyclin D1 and anti-GAPDH were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The horseradish peroxidase-conjugated anti-rabbit and anti-mouse IgG secondary antibodies were purchased from Santa Cruz Biotechnology. Biotinylated- and Cy3-conjugated anti-rabbit secondary antibodies were purchased form Boster (Wuhan, Hubei, China).
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6

Western Blot Analysis of Signaling Proteins

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Total cell-lysates were prepared, separated by SDS-PAGE, and submitted to Western blotting as described [62 (link),63 (link)]. Antibodies were used as follows: Anti-PD-L1 (cat. ab205921, Abcam, 1:1000 in Skim/TBST), anti-Hsp90 (cat. sc7947, 1:1000 in Skim/TBST), and anti-Gab1 (cat. sc133191, Santa Cruz, Heidelberg, Germany, 1:200 in Skim/TBST), anti-P-ERK1/2 (cat. 9101, 1:1000 in BSA/TBST), anti-P-AKT (cat. 9271, 1:2000 in BSA/TBST), anti-ERK1/2 (cat. 9102, 1:1000 in BSA/TBST), anti-AKT (cat. 9272, 1:2000 in BSA/TBST), anti-InsR (cat. 3025, 1:500 in BSA/TBST), anti-IGFR (cat. 14534, 1:500 in BSA/TBST), anti-rabbit HRP (cat 7074, 1:4000 in skim/TBST), and anti-mouse HRP (cat 7074, Cell Signaling Technology, Frankfurt, Germany, 1:4000 in skim/TBST), anti-αTubulin (cat. T5168, Sigma 1:10000, in Skim/TBST). Blots were analyzed with the ChemiDoc gel documentation system (Biorad, Munich, Germany). Relative band intensities were calculated by the QuantityOne software (Biorad) and the band densities were normalized to the corresponding housekeepers Hsp90 and tubulin or unphosphorylated Akt and ERK1/2, respectively.
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7

Immunohistochemical Analysis of p-Akt and Snail in Tissue Microarrays

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In brief, tissue microarray (TMA) sections were deparaffinized and immersed in 10 mM sodium citrate buffer (pH 6.0) in a microwave oven twice for 5 min to enhance antigen retrieval. After washing, slides were incubated with 0.3% H2O2 in methanol to quench the endogenous peroxidase activity. Slides were washed with phosphate-buffered saline (PBS) and incubated with anti-p-Akt (rabbit polyclonal antibody, Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-Snail (monoclonal mouse anti-Snail antibody, Biorbyt, Cambridge, UK), and appropriate negative control antibodies for 2 h at room temperature. After washing in PBS, slides were developed with a VECTASTAIN® ABC (avidin-biotin complex) peroxidase kit (Vector Laboratories, Burlingame, CA, USA) and a 3,3,9-diaminobenzidine (DAB) peroxidase substrate kit (Vector Laboratories) according to the manufacturer’s instructions. All specimens were stained with H and E, which was used as a light counterstain.
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8

Western Blotting of Key Signaling Proteins

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Basic Western blotting methods were followed as previously described [4 (link)] using the following primary antibodies: ERα (Santa Cruz Biotechnology, Santa Cruz, CA), Flotillin-1 (BD Transduction Laboratories, Lexington, KY), anti-pERK1/2 (Santa Cruz Biotechnology), total ERK1/2 (Santa Cruz Biotechnology), anti-pAKT (Santa Cruz Biotechnology), and total Akt (Santa Cruz Biotechnology). Uncalibrated, optical density measurements were made using NIH Image 1.62 (National Institutes of Health, Bethesda, MD, USA) from scanned films.
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9

Western Blot Analysis of Apoptosis Markers

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DA-treated cells were collected and lysed with ice-cold RIPA buffer (MedChemExpress), and a phosphatase inhibitor (Sigma-Aldrich) was added to prevent the degradation of phosphorylated proteins. Forty micrograms of total protein was subsequently separated by SDS‒PAGE and hybridized with the following antibodies after being transferred to PVDF membranes (Merck Millipore) and blocked with blocking buffer (Visual Protein). The primary antibodies were diluted 1:100 and included anti-GAPDH (Abcam, cat. no. ab9484), anti-Bax (Biolegend, cat. no. 633602), anti-Bcl-2 (Cell Signaling, cat. no. 2870s), anti-cleaved-PARP (Cell Signaling, cat. no. 9541s), anti-pPI3K (Cell Signaling, cat. no. 13857s), anti-PI3K (Santa Cruz, cat. no. sc-136208), anti-AKT (Sigma-Aldrich, cat. no. 05-1003), and anti-pAKT (Santa Cruz, cat. no. sc-7985); then, a 1:2,000 dilution of horseradish peroxidase-conjugated secondary antibodies (cat. no. 111-035-003, Jackson ImmunoResearch Laboratories, Inc.) was added and incubated with enhanced chemiluminescence (GE Healthcare Life Sciences) in a Hansor Luminescence Image system (Hansor).
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10

Western Blot Analysis of Cell Signaling

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The EA.hy926 cells were harvested and lysed for Western blot analysis. After centrifugation of cells at 12,000 rpm for 20 min, the protein content of supernatants was evaluated using a BSA protein assay kit (Bio-Red, Hercules, CA, USA). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) (10%) and proteins were transferred onto a nitrocellulose membrane. The membranes were incubated overnight at 4 °C with the following primary antibodies: anti-β-actin (sc-47778, Santa Cruz Biotechnology, CA, USA; 1:1000), anti-p-Akt (sc-377556, Santa Cruz Biotechnology, CA, USA; 1:1000), anti-p-eNOS (#9571S, Cell Signaling Technology, Danvers, Massachusetts; 1:1000), anti-p-PI3K (#17366S, Cell Signaling Technology, Danvers, Massachusetts; 1:1000), and dissolved in 5% skim milk. The immunoblots were incubated for another 2 h at room temperature with specific secondary antibodies. The bands were detected using a chemiluminescent substrate (Cyanagen Sri, Bologna, Italy) and visualized on a film using a FUSION SOLO Vilber Lourmat system (FUSION, Paris, France). The band intensity was calculated using ImageJ software 1.50i software (National Institutes of Health, Bethesda, MD, USA).
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