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5 protocols using msd discovery workbench 4

1

Inflammatory Cytokines and α-Synuclein Levels

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Brain, colon tissues, and serum levels of cytokines (TNF-α, IL-6, IL-1β, and IL-10) were measured using a multiplex immunoassay kit (K15048D) and α-synuclein levels in colon and brain tissues were quantified using an immunoassay kit (K151TGD) from Meso Scale Discovery (Rockville, MD). The assays were performed using a QuickPlex SQ120 analyzer with MSD Discovery Workbench 4.0 software (Meso Scale Discovery, Rockville, MD) according to the manufacturer’s instructions with samples run in duplicate.
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2

Cytokine Profiling of Muscle Cell Cultures

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ELISAs were performed on culture supernatants using the Mouse IL-12/IL-23 p40 Non-allele-specific and Mouse IL-10 Quantikine ELISA kits (R&D Systems) according to manufacturer’s instructions. Cytokine arrays were performed on 1 ml of supernatant from the co-cultures using the Mouse Cytokine Antibody array, Panel A (R&D Systems), according to manufacturer’s instructions. IL-1β and IL-4 analysis of 24-h co-culture supernatants was performed using the MSD Mouse V-PLEX Proinflammatory Panel 1 kit (Meso Scale Diagnostics, Rockville, MD). Briefly, biological triplicates of cell-free supernatants were run in duplicate and analyzed on a QuickPlex SQ120 analyzer using MSD Discovery Workbench 4.0 software (Meso Scale Diagnostics, Rockville, MD). Assay sensitivity using this platform is 0.04 pg/ml.
Whole cell lysates from differentiated muscle cultures were prepared using the NP40 Lysis buffer (Invitrogen) containing anti-proteases (Mini-Complete, Roche, Indianapolis, IN). Protein concentration was determined by the bicinchoninic acid assay (BCA) (Thermo Fisher, Waltham, MA). To assay for IL-1β, 240-ng protein per well was assayed in biological triplicates using the Mouse IL-1β Quantikine ELISA kit (R&D Systems).
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3

Comprehensive Blood Biomarker Assessment

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Venous blood samples were collected from all participants in the morning after an overnight fast. The time of blood draw for the case group was the day after admission to the hospital. Two samples were sent to the Department of Clinical Laboratory for tests of routine blood count and blood biochemistry within 2 h. One sample was immediately sent to the Department of Clinical Laboratory for centrifugation, and separated plasma was frozen at −80°C until analysis.
Blood routine analysis was performed using an automatic hematology analyzer (Mindray BC-2800, Shenzhen, China). Plasma biochemical parameters were measured with an automatic biochemistry analyzer (AU480, Beckdman Counter, USA) by using commercial kits (Roche, Switzerland). MSD Platform (labservice.univ-bio.com, Shanghai, China) was used to measure multiplex levels of inflammation biomarkers [Flt-1, Placental growth factor (PIGF), Angiopoietin-2 (Tie-2), IFN-γ, TNF-α, TNF-β, C-reactive protein (CRP), IL-1α, IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-10, IL-12, IL-13, IL-15, IL-16, and IL-17A]. MSD sector 2100A was used to read the plates, and data were analyzed using MSD Discovery Workbench 4.0 software (from Meso Scale Diagnostics). The limit of detection for these inflammatory cytokines was 0.01 pg/mL, and all standards and plasma samples were assayed in a duplicate test.
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4

Cytokine Release Profiling of Astrocytes

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Cells were plated at 5 × 104 cells per well in 96‐well plates coated with Matrigel. To control the number of cells, the assay was performed relatively soon after seeding. Therefore, the seeding density was higher than that in other assays or usual passages. Three days after plating, culture media were replaced with 100 μL/well of Astrocyte Media containing IL‐1β (Peprotech) or TNFα (Peprotech), harvested 24 h after replacement. Twenty‐five microlitres of conditioned media was subjected to electrochemiluminescence (ECL)‐ELISA analysis by using a V‐PLEX Custom Human Biomarkers kit (IL‐1β, IL‐6, TNF‐α, IL‐4 and GM‐CSF) (Meso Scale Discovery, Rockville, MD) and MESO SECTOR S600 (Meso Scale Discovery). Cytokine concentrations were calculated based on the kit's standard calibration curve using a four‐parameter logistic fit by applying MSD Discovery workbench 4.0 software (Meso Scale Discovery).
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5

Quantification of Plasma and EV-Derived OPG

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Levels of OPG were quantified in plasma and the EV-LDL and EV-TEX subpopulations using an electrochemiluminescence immunoassay (Meso Scale Discovery, MSD) following manufacturers protocol. In short; MSD GOLD Small Spot Streptavidine plates were coated O/N at 4 °C with OPG antibodies (MSD R-Plex human OPG antibody set, F21ZK). After washing three times with 150 µL wash buffer (0.2% Tween-20 in PBS) per well, the coated plates were blocked with blocking buffer A (MSD) for 1 h at RT. Subsequently, plates were then washed as described before and 50 µL diluted plasma or protein lysate (twofold) from the EV subfractions, blancs or calibrators were added to designated wells and incubated for 2 h at RT. After washing the plates, detection antibody was added to all wells and incubated for 1 h. Plates were then washed and filled with 100 µL Reading Buffer (MSD) before analysis on the MSD Instrument (Quickplex SQ120, MSD). Protein concentration were measured as pg/mL. Data analysis was performed using MSD Discovery Workbench 4.0 software (Meso Scale Diagnostics).
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