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11 protocols using chitosanase

1

Cellular Interaction Analysis of TMC/ssON Nanocomplexes

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The cellular interaction of TMC/ssON nanocomplexes was analyzed by flow cytometry analysis. Cells were seeded (60 000 cells) 24 h prior to transfection in 24-well plates. They were incubated with nanocomplexes (as described previously) for 4 h. Chitosanase (Merk Millipore) (3 mU Chitosanase per μg of TMC) in DMEM with pH adjusted to 6.5 was then added to the cells, by completely replacing the previous medium, and incubated for 1 h at 37 °C. Cells were then trypsinized, washed 2× with PBS and finally resuspended in PBS + 2% FBS. Cells were run on a FACSCalibur flow cytometer (BD Biosciences) and data were analyzed using FlowJo software (FlowJo, LLC).
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2

Chondrocyte Isolation and Culture Protocol

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Chitosan (molecular weight, 5 kDa; deacetylation degree, 90%), and Chitosanase were purchased from Sigma-Aldrich (USA). Sodium hyaluronate (molecular weight, 35 kDa) was purchased from Freda Biochem Co., Ltd. (Shandong, China). Deoxyribonuclease I (DNase I), SYBR Prime Ex Taq II were obtained from Invitrogen (USA). The streptavidin-biotin-peroxidase complex (SABC) kit and the primary antibodies against matrix metalloproteinase-3 (MMP-3), matrix metalloproteinase-13 (MMP-13), cyclooxygenase-2 (COX-2) and inducible nitric oxide synthase (iNOS) were purchased from Boster (Wuhan, China). Collagenase II, trypsinase, antibiotics, Dulbecco’s modified Eagle’s medium (DMEM)/F12, and fetal bovine serum (FBS) were obtained from Gibco. All reagents used in this study were of analytical grade.
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3

Chitosan-Based Antimicrobial and Antioxidant Formulation

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High molecular weight chitosan (CAS No. 9012-76-4; MW: 310,000–375,000 Da) was supplied by Hangzhou Simit Chem. & Tech. Co. (Hangzhou, China). Melamine cyanurate (CAS No. 37640-57-6; >99.0%) was purchased from Nachmann S.r.l. (Milano, Italy). NeutraseTM 0.8 L enzyme was supplied by Novozymes A/S (Bagsværd, Denmark). Chitosanase from Streptomyces griseus (Krainsky) Waksman and Henrici (EC 3.2.1.132, CAS No. 51570-20-8), acetic acid (purum, 80% in H2O; CAS No. 64-19-7), rhodamine B (analytical standard, CAS No. 81-88-9), methacrylic anhydride (CAS No. 760-93-0; ≥94%), Arsenazo III (CAS No. 1668-00-4), methanol (UHPLC, suitable for mass spectrometry, CAS 67-56-1), tetrahydrofuran (THF, CAS No. 109-99-9; ≥99.9%), tryptic soy agar (TSA, CAS No. 91079-40-2), and tryptic soy broth (TSB, CAS No. 8013-01-2) were supplied by Sigma–Aldrich Química (Madrid, Spain). Uranyl nitrate hexahydrate (CAS 13520-83-7, ACS grade, Honeywell Fluka) was supplied by Fisher Scientific SL (Madrid, Spain). Potato dextrose agar (PDA) was purchased from Becton Dickinson (Bergen County, NJ, USA).
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4

Chitosanase-Mediated Micelle Dynamics

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PCL (Schiff or amide link) micelles in 40 mM sodium acetate (pH = 6) were prepared via dialysis method. Chitosanase (1 mg/mL, Sigma-Aldrich, Cat. 220477) was then added into the micelle solution to a final concentration of 2 μM. The mixture was incubated at 37 °C with gentle shaking. The size and count number were examined by DLS at different times following the incubation.
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5

Comprehensive Enzyme Assay Preparation

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Cellulase, chitinase, chitosanase (25.9 U/mL), drieselase, β-glucosidase, β-glucuronidase (140 U/mL), hyaluronidase, laminarinase, lysozyme, lyticase, macerozyme, pectinase (3,000 U/mL), pectolyase, sulphatase (3.37 mg/mL), and trypsin were purchased from Sigma Aldrich (St. Louis, MO). Zymolyase (10 mg/mL) was purchased from ZymoResearch (Irvine, CA). macerozyme was purchased from RPI corp (Mt Prospect, IL). Stock concentrations of enzymes were 20 mg/mL unless otherwise noted.
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6

Yeast Spheroplast Preparation Protocol

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Cells were grown on mDixon’s medium and washed with water by centrifugation at 4000 rpm for 5 min. Cells were resuspended in 10 mL of 5% (v/v) 2-mercaptoethanol solution in water and incubated at 30 °C/ 150 rpm for 45 min. The cells were pelleted, washed, and resuspended in 3 mL spheroplasting buffer (40 mM citric acid, 120 mM Na2HPO4 and 1.2 M sorbitol) for every 1.5 × 109 cells. Cell clumps were dissociated by mild sonication for 30 s using the medium-intensity setting in a Bioruptor (Diagenode). Lysing enzymes from Trichoderma harzianum (Sigma), chitosanase (Sigma), and zymolyase-20T (MP Biomedicals) were added at 20 mg/mL, 0.2 µg/mL, and 100 µg/mL, respectively. The spheroplasting suspension was incubated at 30°C/65 rpm for 6–8 hr. The suspension was examined under a microscope to estimate the proportion of spheroplasts. Spheroplasts were washed with ice-cold 1xPBS and used as per the experimental design (adapted from Boekhout, 2003 ).
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7

Polypropylene Mesh Biomodification for Tissue Regeneration

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A polypropylene mesh, Gynemesh® PS (Ethicon, Somerville, NJ) was used. Maleic anhydride, chondroitin sulfate B, chitosan (low molecular weight, deacetylation degree 85%), chondroitinase ABC, chitosanase, bovine serum albumin (BSA) and histologic staining materials were purchased from Sigma Aldrich (St. Louis, MO). Murine IL-4, anti-murine IL-4 antibody, murine IL-4 ELISA detection kit were purchased from Peprotech (Rocky Hill, NJ). Mouse arginase-1 antibody (rabbit), anti-rabbit Alexa-fluor 488 (donkey) and anti-rabbit Alexa-fluor 594 (donkey) were purchased from Abcam (Cambridge, MA). Mouse iNOS antibody (rabbit) was purchased from Santa Cruz (Dallas, TX). Mouse F4/80 antibody (rat) was purchased from AbD Serotec/Bio Rad (Raleigh, NC). Anti-rat Alexa-fluor 488 (donkey) and anti-rabbit Alexa-fluor 546 (donkey) were purchased from Thermo Fisher (Pittsburgh, PA).
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8

Polypropylene Mesh Functionalization for Tissue Regeneration

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A polypropylene mesh, Gynemesh® PS (Ethicon, Somerville, NJ) was used. Maleic anhydride, chitosan (low molecular weight, deacetylation degree 85%), dermatan sulfate (chondroitin sulfate B, from porcine intestinal mucosa, ≥ 90% purity), chitosanase, chondroitinase ABC, bovine serum albumin (BSA) and histologic staining materials were purchased from Sigma Aldrich (St. Louis, MO). Murine IL-4, MCP-1 and ELISA kits were purchased from Peprotech (Rocky Hill, NJ), all with ≥ 98% purity by SDS-PAGE and HPLC analyses. Rabbit anti-mouse arginase (Arg-1, cat. ab91279), inducible nitric oxide synthase (iNOS, cat. ab3523), and anti-rabbit, anti-rat Alexa-fluor (donkey) secondary antibodies were purchased from Abcam (Cambridge, MA). Rat anti-mouse F4/80 (cat. MCA497R) was purchased from ABD Serotec (Raleigh, NC). DAPI and Milli-Q water were purchased from Thermo Fisher Scientific (Pittsburgh, PA).
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9

Enzymatic Hydrolysis of Chitosan

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Chitosan of low molecular weight (DD = 75–85%; Mw = 150 × 10−3) and Chitosanase (EC 3.2.1.132) from Streptomyces griseus with 50 U/mg activity and lactic acid (85% syrup) were obtained from Sigma-Aldrich, Poznan, Poland. Cellulase (E.C. 3.2.1.4) from Trichoderma reesei with 127.5 U/mg activity was purchased from Dyadic, Jupiter, FL, USA. Cellulase showed side activities typical of beta-glucanase (33 U/mg).
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10

Chitosan-based Antimicrobial Formulations

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High-molecular-weight chitosan (CAS 9012-76-4; 310 to 375 kDa) was sourced from Hangzhou Simit Chem. & Tech. Co. (Hangzhou, China). Neutrase® enzyme was provided by Novozymes A/S (Bagsværd, Denmark). Sodium carboxymethylcellulose (CAS 9004-32-4; USP reference standard), sodium alginate (CAS 9005-38-3; pharmaceutical secondary standard), acetic acid (CAS 64-19-7; purum, 80% in H2O), methacrylic anhydride (CAS 760-93-0; ≥94%), sodium tripolyphosphate (CAS 7758-29-4; ≥98%), carvacrol (CAS 499-75-2, 98%), chitosanase from Streptomyces griseus (Krainsky) Waksman and Henrici (EC 3.2.1.132, CAS 51570-20-8), methanol (UHPLC, suitable for mass spectrometry, CAS 67-56-1), tetrahydrofuran (THF, CAS 109-99-9; ≥99.9%), and Tween® 20 (CAS 9005-64-5) were procured from Merck (Darmstadt, Germany). Potato dextrose broth (PDB) and potato dextrose agar (PDA) were supplied by Becton, Dickinson, and Company (Franklin Lakes, NJ, USA).
Botrytis cinerea (CECT 20973) and P. expansum (CECT 20906) were obtained from the Spanish Type Culture Collection (Valencia, Spain), while C. coccodes (CRD 246/190) was sourced from the Regional Diagnostic Center of Aldearrubia (Junta de Castilla y León; Castilla y León, Spain).
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