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38 protocols using sp 9000

1

Immunohistochemical and Immunofluorescence Staining Protocol

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Immunohistochemical staining was performed using Biotin-Streptavidin horseradish peroxidase (HRP) Detection Systems (SP-9000, ZSGB-BIO, Beijing, China). The tissue sections were incubated with 3% H2O2 deionized water for 10 min and blocked with goat serum (SP-9000, Reagent A) at room temperature. Then, the tissue sections were incubated with rabbit polyclonal anti-KLF4 (1:2,000 dilution, Cat. No. ab215036; San Francisco, Abcam), rabbit polyclonal anti-E-cadherin (1:400 dilution, Cat. No. 3195T; Danvers, CST), rabbit polyclonal anti-vimentin (1:3,000 dilution, Cat. No. 10366-1-AP; Rosemont, Proteintech) primary antibodies overnight at 4°C.
Immunofluorescence staining was performed to detect KLF4, E-cadherin, and vimentin expression. The tissue sections were blocked with 5% bovine serum albumin (BSA) and incubated with rabbit monoclonal anti-KLF4 (1:500 dilution, Cat. No. ab214666; San Francisco, Abcam), rabbit polyclonal anti-E-cadherin (1:200 dilution, Cat. No. 3195T; Danvers, CST), and rabbit monoclonal anti-vimentin (1:400 dilution, Cat. No. ab92547; San Francisco, Abcam) primary antibody overnight at 4°C separately. The tissue sections were incubated with GoatAnti-Rabbit IgG H&L(HRP) (1:300 dilution, Cat. No. ab6721; San Francisco, Abcam) second antibody at room temperature for 1 h.
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2

Immunohistochemical Analysis of Bone Markers

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After deparaffinization, the slices were rehydrated; washed with PBS; incubated with 3% hydrogen peroxide at room temperature for 15 minutes; washed with PBS; incubated with hyaluronidase IV at 37 °C for 30 minutes; washed with PBS; blocked with 1:10 normal blocking serum at room temperature for 45 minutes; and incubated with a 1:100 dilution of anti-COL-I (ab84956, Abcam), a 1:100 dilution of anti-Osterix (ab22552, Abcam) or a 1:100 dilution of anti-COL-X (ab58632, Abcam) at 4 °C overnight. The slides were washed and incubated with a secondary antibody (sp9000, ZSGB-BIO) at 37 °C for 20 minutes, washed with PBS incubated with streptavidin peroxidase at 37 °C for 20 minutes. Then, the slides were washed with PBS and exposed for 5 minutes to the peroxidase DAB substrate (ZSGB-BIO, China). After staining with hematoxylin, the slides were examined with an Olympus microscope mounted with an Olympus video camera. We used Image-Pro Plus version 6.0 (Media Cybernetics, Inc.) to analyze the results. We first circled the area of interest and then measured the cumulative optical density (OD) of what we stained. Afterward, we determined the average OD with the cumulative OD divided by the size of the area of interest.
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Immunohistochemical Analysis of Tumor Markers

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Immunohistochemistry was performed to test target proteins expression in samples from clinical patients and tumour xenographs by standard protocols. Briefly, paraffin sections (4 μm) were deparaffinized and rehydrated, and heat-induced antigen retrieval was conducted in sodium citrate buffer (10 mM, pH 6.0). Endogenous peroxidases were blocked by incubation in 0.3% H2O2. The sections were then incubated with primary antibodies against FMNL3 (Cat. #HPA023201; Sigma, Germany), E-cadherin (Cat. #3195 S; Cell Signaling, MA, USA), Vimentin (Cat. #5741 S; Cell Signaling) and MMP-9 (Cat. #sc-21733; Santa Cruz) at 4 °C overnight. Non-immune IgG was used as a negative control. Antigenic sites were visualized using a SP9000 and DAB kits (ZSGB-BIO, Beijing, China). The immunoreactive scores (IRS) of FMNL3, E-cadherin, Vimentin and MMP-9 were calculated as follows: 0, negative; 1, weak; 2, moderate; or 3, strong. The percentage of positive cells was scored as follows: 1, 0–9% positive cells; 2, 10–50% positive cells; and 3, >50% positive cells. The two scores were multiplied together and samples with a total IRS of 0, 1–3, 4–6 and 7–9 were considered as (−), (+), (++) and (+++), respectively.
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4

NPC Tissue Specimen Analysis Protocol

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The NPC tissue specimens (n=36) were collected from the Nanfang Hospital of Southern Medical University (Guangzhou, China). These tissue specimens were from biopsy samples of NPC patients (pathologically confirmed) in 2021. The TNM classification was performed according to the 8th edition of the UICC/AJCC staging criteria. The clinical characteristics of these 36 patients with NPC are shown in Supplementary Table 3. This study was approved by the Ethics Committee of Nanfang Hospital of Southern Medical University. Formalin-fixed, and paraffin-embedded tissues were sectioned at 4 mm thickness, then harvested and fixed in 4% paraformaldehyde overnight at 4°C. The antigen blocking was performed using 10% goat serum (SP-9000, Zsbio, China). The sections were probed overnight at 4°C with primary anti-TGF-β1 (PA5-40772, Invitrogen, USA), anti-c-Jun (AF6089, Affinity, USA) and anti-STT3A (sc-100796, Santa Cruz, USA) antibodies. DAB color reagent kit (ZLI-9018, Zsbio, China) was used for staining. The numbers of positive cells were measured by two independent pathologists through five randomly selected fields at ×400 magnification.
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Immunohistochemical Analysis of Osteocalcin Expression

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For immunohistochemical staining, the sections were heated with citrate buffer for antigen retrieval, blocked with normal goat serum, and then incubated with rabbit polyclonal antiosteocalcin antibody (OCN, 1:200, GB11233, Wuhan Servicebio Technology Co., Ltd.). After being washed with PBS three times, the sections were incubated with biotinylated goat antirabbit antibody (SP-9000, ZSGB-BIO, Beijing, China) and stained with substrate−chromogen solution 3,3ʹ-diaminobenzidine tetrahydrochloride (DAB). Finally, slides were sealed with neutral resin and observed with an inverted phase-contrast microscope (Olympus, Tokyo, Japan). Three images were selected from each group, and the proportion of the positive area was analyzed and statistically analyzed with a digital pathological and immunohistochemical image analysis software based on the artificial intelligence learning (Aipathwell, Wuhan Servicebio Technology Co., Ltd., Wuhan, Hubei, China).
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6

Immunohistochemical Analysis of α-SMA in Liver Tissue

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Liver paraffin sections (5 μm) were deparaffinized and dehydrated, and microwave antigen retrieval was performed following peroxidase quenching with 3% H2O2 for 10 min. Subsequently, the sections were blocked with 10% goat serum (C0265, Beyotime, Shanghai, China) for 30 min at room temperature (RT). The primary antibody mouse anti-α-smooth muscle actin (α-SMA) antibody (Ab5694, Abcam, Cambridge, U.K.) was diluted 1/200, incubation overnight at 4°C. A Biotin conjugated goat polyclonal to rabbit IgG (SP-9000, ZSGB-BIO, Beijing, China) was used at dilution at 1/200 as the secondary antibody followed by incubation with horseradish peroxidase (HRP)-Streptavidin for 30 min and then staining was detected with 3,3′-diaminobenzidine tetrahydrochloride (DAB) for 5–10 min. For better documentation, the tissue sections were counterstained with hematoxylin.
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7

Immunostaining Protocol for Kidney Tissue

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For immunofluorescence staining, 8 μm cryosections were returned to room temperature for 30 min and then washed three times in PBS. Next, the cells were incubated with 5% BSA containing 0.1% Triton X-100 at room temperature for 1 hr and then incubated with a series of primary antibodies overnight at 4°C. The following secondary antibodies were used: Alexa Fluor 488-, Alexa Fluor 594-, Alexa Fluor 555-, and Alexa Fluor 647-labeled goat anti-rabbit, goat anti-mouse, or goat anti-rat (1:400; Invitrogen). FITC-labeled Lotus tetragonolobus lectin (LTL, 1:400, Vector Laboratories, Burlingame, CA, USA) was used to stain proximal tubules. DAPI was used for nuclear counterstaining. For quantification, the positive immunostaining area or positively stained cells were measured by ImageJ software. For immunohistochemistry staining of kidney tissues, after dewaxing and rehydration, paraffin sections were incubated with primary antibodies overnight at 4°C. Horseradish peroxidase-conjugated secondary antibody was used (1:200, SP-9000, ZSGB-BIO, Beijing, China), and a DAB staining kit was used to develop colors (ZLI-9017, ZSGB-BIO). The integrated optical density values of positive staining were measured using Image-pro plus 6.0 software. Antibodies are listed in Supplementary file 1.
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8

Immunohistochemical Detection of PCNA and HA-tag

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Briefly, paraffin sections were dewaxed, washed twice in absolute ethanol, follow the instructions (ZSGB-BIO, SP9000) for hydration and antigen retrieval. Next, incubated slides with reagent 1 for 10 min at room temperature to inactivate endogenous peroxidase, and followed by three times washes in PBS for 3 min. Then sections were incubated in blocking solution (Reagent 2) for 15 min, continued by overnight incubation at 4 °C with PCNA (#13110, Cell Signaling Technology), HA-tag antibody in immunohistochemical wet box. Next day, sections were three washes with PBS, then incubated with reagent 3 at 37 °C for 30 min in wet box, washed again in PBS, and incubated with reagent 4 at 37 °C for 30 min. After three times washed with PBS, immunolabeling was performed with 1x diaminobenzidine (DAB, ZSGB-BIO, ZLI-9018). Finally, the sections were counterstained with hematoxylin (BL702B, Biosharp, China).
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9

Immunohistochemical Analysis of ACOX1 in ccRCC

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Paraffin-embedded ccRCC tissues were cut into 4-μm thick sections. An SP-9000 detection kit (ZSGB-Bio, Beijing, China) was used to perform the IHC staining. The slides were subsequently baked at 60°C for 1 h, deparaffinized, and rehydrated in xylene and decreasing concentrations of ethanol, followed by antigen retrieval in 10 mM Tris–citrate buffer (pH of 7.0) in a pressure cooker. Endogenous peroxidase activity of the sections was blocked by a streptavidin-peroxidase staining kit (No. SP-9000; Zsbio, China), and each section was then incubated with 5% normal goat serum for 30 min at room temperature to block nonspecific bindings. Subsequently, the slides were incubated with a primary ACOX1 antibody (Cat No. 10957-1-AP, Wuhan Sanying [diluted 1:200]) at 4°C overnight. After washing the primary antibody with phosphate-buffered saline, the slides were then incubated with a secondary antibody (SP-9000, ZSGB-BIO, Beijing, China), at room temperature for 10 min. Finally, the slides were developed with 3,3′-diaminobenzidine (DAB, ZLI9018ZSGB-BIO, Beijing, China), and hematoxylin counterstaining, dehydrating, clearing, and mounting were performed.
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10

Ovarian Tissue Immunohistochemistry Protocol

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Ovarian paraffin sections were dewaxed with xylene and rehydrated with alcohol gradient before immunohistochemistry and immunofluorescence. Following the instructions of the immunohistochemical kit (SP-9000, ZSGB-BIO, China), after the sodium citrate solution heating and repairing (ZLI-9064 pH 6.0, ZSGB-BIO, China), all slices were sealed with H2O2 and 10% goat serum. The sections were then incubated with the first antibody at 4 °C overnight (Ki-67, Collagen 1 and FOXL2,1:100, Proteintech, China; Collagen IV, FN1 and Laminin,1:100, Bioss, China). On the second day, all sections were washed with PBS and incubated with the secondary antibody for 2 h at room temperature. The primary antibody was replaced by PBS as a negative control. The detection of bound antibody was performed using avidin-biotin complex. DAB was performed at room temperature for 1 min as chromogen. The nuclei were counterstained with Mayer’s hematoxylin for 2 min. Staining intensity was recorded as 0 (negative), 1 (weak), 2 (medium), and 3 (strong). The positive cells were observed and evaluated using an optical microscope (Nikon 80i).
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