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7 protocols using anti tfr

1

Subcellular Protein Fractionation and Immunoblotting

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Protein fractionation was performed with the Subcellular Protein Fractionation kit for cultured cells (Thermo Scientific-Pierce; 78840). Soluble fraction corresponds to a mixture of cytosolic and nuclear soluble fractions described in the supplier's instructions.
For immunoblot, protein samples were resolved by SDS-PAGE, transferred to PVDF membranes (Millipore), and incubated with primary antibodies anti-Ccnd1 (monoclonal DCS-6, BD Pharmigen), anti-Cdk4 (polyclonal C-22, sc-260), anti-HA (rat monoclonal 3F10, Roche), anti-TfR (monoclonal H68.4, Invitrogen), anti-RalB (rabbit polyclonal, Cell Signaling), anti-PCNA (monoclonal PC10, Abcam) and anti-tubulin (monoclonal B-5-1-2 Sigma). Appropriate peroxidase-linked secondary antibodies (GE Healthcare UK Ltd) were detected using the chemiluminescent HRP substrate Immobilon Western (Millipore). Chemiluminescence was recorded with a ChemiDoc-MP imaging system (BioRad).
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2

Immunofluorescence Labeling of Endocytic Organelles

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Cells were enzymatically labeled, fixed in 2% paraformaldehyde, 7% sucrose, in PBS. Free aldehydic groups from paraformaldehyde were covered incubating with 50 mM NH4Cl for 10 min. Buffer containing 0.25% Saponin, 5% normal goat serum, and 2% serum bovine albumine in PBS was used for permeabilization and blocking; incubation with antibodies was performed in the presence of 0.25% Saponin. The following primary antibodies were used: mouse antiearly endosome antigen 1 (anti-EEA1) 1:100 (610456, BD Biosciences, San Jose, CA, USA); rabbit antilysosomal-associated membrane protein 1 (anti-LAMP1) 1:500 (ab24170; abcam, Cambridge, UK); rabbit anti-Rab4 1:100 (sc-312, Santa Cruz Biotechnology, Santa Cruz, CA, USA); rabbit anti-Rab5 1:100 (sc-28570, Santa Cruz Biotechnology); rabbit anti-Rab7 1:100 (sc-10767, Santa Cruz Biotechnology); rabbit anti-Rab11 10 µg/ml (71-5300, Invitrogen); mouse antivesicle-associated membrane protein 2 (anti-VAMP2) 1:500 (Synaptic Systems, Gottingen, Germany); rabbit anti-VAMP3 1:200 (ThermoFisher Scientific); rabbit anti-Syntaxin-6 1:100 (Synaptic Systems); and mouse antitransferrin receptor (anti-TfR) 1:200 (Invitrogen). The secondary antibodies used were: goat anti-Mouse Alexa Fluor® 405 conjugate 1:250 (Invitrogen); goat anti-Rabbit DyLight 405 conjugate 1:500 (ThermoFisher Scientific). Immunofluorescence microscopy was performed as described before.
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3

Antibody Panel for HIV Protein Analysis

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We listed all antibodies used in this study, anti-Gag (made by ourselves); anti HIV-1 Env gp120 (Abcam); anti-CCDC8 (Cat#: H00083987-B01P, Abnova); anti-Caveolin-1 (Santa Cruz Biotechnology); anti-TFR (Invitrogen); anti-His (Invitrogen), anti-Flag (Invitrogen), anti-HA (Invitrogen), anti-V5 (Invitrogen), anti-CD63 (Abcam), anti-26S proteasome marker PSMD8 (Cat #: H00005714-B01, Abnova) and secondary antibody anti-mouse (Invitrogen), anti-rabbit (Invitrogen).
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4

Western Blotting of Caveolin and Transferrin Receptor

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Aliquots (25 μl) were taken from each fraction, mixed with Laemmli sample buffer (Bio-Rad 161-0737) containing 5% 2-mercaptoethanol, separated by SDS-PAGE on a 4–15% polyacrylamide gel, and transferred to nitrocellulose membranes (Pierce Biotechnology, Rockford, IL) for Western blotting. Membranes were probed with a primary antibody to caveolin (1:1000 anti-caveolin, BD Transduction Laboratories, 610059) or transferrin receptor (1:1000 anti-TfR, Invitrogen, 13-6800). Secondary antibodies included goat anti-mouse or anti-rabbit conjugated to horseradish peroxidase (1:10000, Thermo Scientific Pierce, 31432 or 31460). Reactions were visualized with SuperSignal West Femto chemiluminescent substrate (Thermo Fisher Pierce, 34095) and imaged on an Alpha Innotech FluorChem SP Imaging System (ProteinSimple).
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5

Antibodies for Protein Analysis

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The following antibodies were used in this study: Anti-PrP antibodies 3F4 and 8H4 (Signet Laboratories, Dedham, MA), and SAF32 (189720, Cayman chemicals, USA), anti-ferritin (F5012, Sigma Aldrich, USA), anti-TfR (136800, Invitrogen, USA), anti-Tf (GTX2123, GeneTEX, USA), anti-ceruloplasmin (Dako, USA), Mouse IgG (5415, Cell signaling Technology, USA), anti-Fpn (NBP1-21502, Novus biological, USA), anti β-actin (MAB1501, Milipore, USA) and anti GAPDH (GT239, GeneTEX). HRP-conjugated anti-mouse, NA931V and anti-rabbit, NA934V (GE Healthcare, UK). Alexa Fluor-conjugated secondary antibodies (molecular probes), PNGase F (P0704S, NEB, USA). NAP (Non-animal protein) blocking solution (786-190T, G-Biosciences, USA), Hoechst (#33342, Invitrogen, USA), Fluoromount-G (Southern Biotech, USA).
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6

Antibodies for Protein Analysis

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The following antibodies were used in this study: Anti-PrP antibodies 3F4 and 8H4 (Signet Laboratories, Dedham, MA), and SAF32 (189720, Cayman chemicals, USA), anti-ferritin (F5012, Sigma Aldrich, USA), anti-TfR (136800, Invitrogen, USA), anti-Tf (GTX2123, GeneTEX, USA), anti-ceruloplasmin (Dako, USA), Mouse IgG (5415, Cell signaling Technology, USA), anti-Fpn (NBP1-21502, Novus biological, USA), anti β-actin (MAB1501, Milipore, USA) and anti GAPDH (GT239, GeneTEX). HRP-conjugated anti-mouse, NA931V and anti-rabbit, NA934V (GE Healthcare, UK). Alexa Fluor-conjugated secondary antibodies (molecular probes), PNGase F (P0704S, NEB, USA). NAP (Non-animal protein) blocking solution (786-190T, G-Biosciences, USA), Hoechst (#33342, Invitrogen, USA), Fluoromount-G (Southern Biotech, USA).
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7

Immunofluorescent Localization of Organelle Markers

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Cells were fixed in 4% paraformaldehyde in PBS and permeabilized/blocked with 0.1% saponin/5% goat serum in PBS (a methanol permeabilization step was included for anti-PDI labelling). Antibody incubations were performed in PBS/0.01% saponin/5% goat serum. The primary antibodies used were anti-RFP (rat monoclonal 5F8; antibodies-online.com), anti-mCherry (mouse monoclonal 1C51; Novus Biologicals), anti-Lamp1 (rat monoclonal 1D4B; DSHB), anti-TfR (mouse monoclonal H68.4; Invitrogen), anti-EEA1 (rabbit monoclonal, C45B10; Cell Signalling Technology), and anti-PDI (rabbit monoclonal, C81H6; Cell Signalling Technology). The secondary antibodies used were derived from goat serum, cross-absorbed, and conjugates of Alexa 488 (for organelle markers) or Alexa 546 (for mCherry) (Invitrogen). Cells were viewed on a Zeiss 510 META confocal microscope, in multitrack mode, using the following excitation/emission parameters (nm): Alexa 488 (488/505–530) and Alexa 546 (543/>560).
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