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3t system

Manufactured by Siemens
Sourced in Germany

The 3T system is a lab equipment product from Siemens. It is a high-field magnetic resonance imaging (MRI) system that operates at a magnetic field strength of 3 Tesla (T). The core function of the 3T system is to generate high-quality images of the human body for diagnostic and research purposes.

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12 protocols using 3t system

1

Multimodal MRI Protocol for Brain Imaging

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All MR imaging was performed on the 3T system (Siemens, Erlangen, Germany). Parameters for Magnetization Prepared Rapid Acquisition Gradient Echo (MPRAGE) images were: repetition time (TR) = 2250 ms, echo time (TE) = 2.7 ms, inversion time (TI) = 900 ms, flip angle (FA) = 8°, slice thickness: 1.0 mm, field of view (FOV) = 200 mm, acquisition matrix = 256 × 192 × 124, reconstructed as 256 × 256 × 124. Axial fluid attenuation inversion recovery (FLAIR) images were acquired with TR/TE/TI 9000/99/2500 ms; FA 130°, slice thickness: 3.3 mm, field of view (FOV) 220 mm, matrix = 256 × 192 reconstructed as thirty 256 × 256 images.
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2

Multimodal Neuroimaging of Neurodegenerative Disorders

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One hundred and thirty-three patients (bvFTD n = 28, nfvPPA n = 15, svPPA n = 5 PPA n = 10, PSP n = 53, CBS n = 22) from the phenotyped cohort were scanned at the Wolfson Brain Imaging Centre, University of Cambridge on a Siemens 3T system. Structural MRI was performed using a T1-weighted magnetization-prepared rapid acquisition gradient echo (MPRAGE) sequence. Images were preprocessed using SPM12 with default settings. Grey and white matter segments were combined to whole brain images for further analysis. The DARTEL pipeline was used to create a study-specific template using all images. Age and total intracranial volume were included in a multiple regression and regressed out of the data. Source-based morphometry was used on the residual images to identify covarying networks of grey and white matter atrophy, further details of this step are given in the next section.
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3

Structural Brain MRI Segmentation Protocol

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All MRI was performed on the 3T system (Siemens, Erlangen, Germany). The imaging protocol consisted of sagittal T1-weighted magnetization prepared rapid acquisition gradient echo. Intracranial volumes were estimated using Statistical Parametric Mapping segmentation procedure (SPM, ver.12, with new-segment extension). Cortical thickness and hippocampal, CSF, and ventricular volumes were obtained using the FreeSurfer (ver.6.0, MGH/HST Martinos Center for Biomedical Imaging, USA). Hippocampal volume was measured as Left Hippocampus + Right Hippocampus/IntraCranialVol*100. Cortical thickness was averaged with surface regions of interest, which were defined by the Desikan-Killiany atlas [33] (link).
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4

Stereotactic Presurgical Assessment with SEEG

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MRI were acquired on a Siemens 3 T system according to a standardized presurgical assessment protocol that included 3D T1-weighted magnetization-prepared rapid gradient echo (MPRAGE) images. Intracerebral multiple contact electrodes (10–18 contacts with length 2 mm, diameter 0.8 mm, and 1.5 mm apart, Dixi) were placed stereotactically. Post-implantation CT was performed to check the electrodes positions and exclude intracranial bleeding. SEEG were recorded on a 256 channels Natus system, sampled at 1024 Hz and saved on a hard disk (16-bits resolution) using no digital filter. Two hardware filters were present in the acquisition procedure: a high pass filter (cut-off frequency equal to 1 Hz at − 3 dB) and an antialiasing low‐pass filter (cut-off at 340 Hz).
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5

PCA and Healthy Brain MRI Comparison

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PCA patients, as well as a group of 30 age- and gender-matched healthy subjects (CTRL, men/women: 14/16; mean age = 61.5; standard deviation = 8.4; age range = 45–79), underwent the MRI protocol. Brain MRI were acquired with a 3 T system (Siemens, Erlangen, Germany) at the Center for Magnetic Resonance Research (CENIR), Brain and Spine Institute (ICM), Paris. A high-resolution structural volume was acquired using a T1-weighted 3D magnetization prepared rapid gradient echo (MPRAGE) sequence (160 sagittal images; thickness 1 mm; FOV 256 × 256 mm2; matrix size 256 × 256). Eight PCA patients (two PCA-tAD, four PCA-aAD and two PCA-nonAD) were scanned with compatible parameters but on a different MRI machine. The type of MRI machine was therefore added as a control covariate in our statistical analyses.
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6

3T fMRI Acquisition of Resting-State Brain Activity

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Brain MRI scans were acquired with a 3T system (Siemens, Erlangen, Germany) at the Center for Magnetic Resonance Research (CENIR), Brain and Spine Institute (ICM), Paris. A high-resolution structural volume was acquired using a T1-weighted 3D magnetization prepared rapid gradient echo (MP-RAGE) sequence (160 sagittal images; thickness 1 mm; field of view 256×256 mm2; matrix size 256×256). The functional images were acquired at rest by T2*-weighted fast echo planar imaging (flip angle = 90◦, echo time = 30 ms, repetition time = 2.26 s, 45 interleaved axial slices, gap = 0.3 mm, voxel size = 3 × 3 × 3 mm3, acquisition time=8 min=). During RS fMRI scanning, subjects were instructed to remain motionless, to keep their eyes closed, and to not think about anything in particular. Fat saturation was performed to avoid chemical shift artifacts. All slices were positioned to run parallel to a line that joins the most inferoanterior and inferoposterior parts of the corpus callosum.
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7

Grading White Matter Hyperintensities on MRI

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All MR imaging were performed on the 3T system (Siemens, Erlangen, Germany). All participants underwent structural T-1 weighted, axial fluid attenuation inversion recovery (FLAIR), and susceptibility weighted imaging. FLAIR images were acquired with TR (repetition time) =9000ms, TE (echo time) =99 ms and TI (inversion time) =2500 ms; FA (flip angle) 130O, slice thickness: 3.3 mm, FOV (field of view) 220 mm, matrix=256x192 reconstructed as 30 256×256 images (See Figure 1).

Examples of different severity of white matter lesions in study subjects. (A) None (65 year old European American female). (B) Thought present (66 year old African American male). (C) Pronounced (70 year old European American female).

WMH was graded from 0 to 3 on the Fazekas scale.22 (link) Periventricular (PWMH) and deep white matter hyperintensities (DWMH) were graded separately and summed to create the total load (possible score 0–6). Severe WMH was defined as a total (summed) score ≥4. We analyzed and calculated the following imaging markers:

Any DWMH (Fazekas 1–3), Any PWMH (Fazekas 1–3) and Any WMH Total (Fazekas score 1–6)

Severe DWMH (Score≥2), Severe PWMH (Score≥2), and Severe WMH (Score≥4)

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8

Comprehensive Multimodal Brain Imaging

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All MR imaging was performed on the 3T system (Siemens, Erlangen, Germany). Imaging protocol consisted of sagittal T1-weighted Magnetization Prepared Rapid Acquisition Gradient Echo, axial fluid attenuation inversion recovery and perfusion Arterial Spin Labeling (ASL) sequences. Details of MRI acquisition are given in the Supplement.
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9

High-Resolution T1 and T2 MRI Brain Imaging

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MRI data were acquired using a Siemens 3T system with a 12-element head coil. Participants were scanned with high-resolution T1 and T2 MRI sequences. The T1 sequence utilized a turbo field echo sequence (MP-RAGE) with the following parameters: FOV = 256 × 256 mm, 160 sagittal slices, 15 degree flip angle, TI = 900 ms, TR = 9.5 ms, TE = 5.7 ms. The T2 sequence utilized a SPACE (Sampling Perfection with Application optimized Contrasts by using different flip angle Evolutions) protocol with the following parameters: field of view (FOV) = 256 × 256 mm, 160 sagittal slices, variable degree flip angle, TR = 3200 ms, TE = 352 ms.
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10

Multimodal Brain Imaging with MEG and MRI

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MEG data were recorded using a MEG scanner with 151 axial gradiometers (Omega-151; CTF, Coquitlam, BC, Canada) in a magnetically shielded room at the Hospital for Sick Children (sampling rate: 600 Hz, filters: 0–150 Hz, third-order spatial gradient noise cancellation). Head position was continuously recorded by coils placed on three fiducial points on the subject’s head (nasion, left and right pre-auricular points). After the MEG session, T1-weighted MRI scans were acquired in all participants on a Siemens 3T system; fiducial points from the MEG session were recorded on MRI images to allow precise MEG/MRI co-registration.
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