The largest database of trusted experimental protocols

11 protocols using sc 1616 hrp

1

Detecting Proteasome Subunit in Fly Lysate

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole fly lysate (10μg) was run on a 4-15% SDS-PAGE gradient gel (catalog # 4568084, Bio-Rad) for 1 hour at 100V and then transferred to a PVDF membrane at 4°C (catalog # 1620177XTU, Bio-Rad). Blots were blocked in StartingBlock™ (Catalog # 37538, Thermo-Fisher Scientific). The monoclonal antibody against the α-subunit of the 20S core proteasome of D. melanogaster was used (1:100 dilution, ON at 4°C, catalog # sc- 65755, Santa Cruz Biotechnology). The goat polyclonal anti-Actin-HRP antibody, conjugated to horseradish peroxidase (1:1000 dilution, 1 hour at RT, catalog # sc-1616-HRP, Santa Cruz Biotechnology) was used for protein loading control.
+ Open protocol
+ Expand
2

Analyzing PTEN Protein Expression in SiHa Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Forty eight hours after transfection assays, SiHa cells were harvested and protein was isolated for Western Blot assays. Briefly, the cells were washed with 1X PBS and incubated for 30 minites at 4 °C with lysis buffer containing 50 mM Tris–HCl, 150 mM NaCl, 0.5 % SDS, 1 % NP40, 0.5 mM AEBSF, 10 μg/μl antipain, 10 μg/μl aprotinin, 10 μg/μl khymostatin, 10 μg/μl leupeptin, 10 μg/μl pepstatin, 1 mM EDTA, 100 mM PMSF and 0.5 mM DTT (Sigma-Aldrich, NJ). The lysates were centrifuged at 11,000 rpm for 15 min. Total proteins from supernatants were determined using the BCA kit (Pierce, Rockford, IL). 50 μg of proteins were electrophoresed on 12 % SDS-PAGE, transferred into nitrocellulose membranes and incubated for antibodies detection. Biotinilated and pre-stained molecular weight marker was included. IgG mouse monoclonal antibody sc-7974-HRP was used to detect human PTEN protein. Human beta-actin protein was detected using IgG polyclonal antibody sc-1616-HRP (Santa Cruz, Biotechnology, Santa Cruz, CA). After the peroxidase coupled secondary goat antibody mouse anti-IgG was added, bound antibodies and protein were detected by enhanced chemiluminescence using the renaissance Western Blot kit (Pierce, Rockford, IL). The membranes were subjected to autoradiography with an intensifier screen.
+ Open protocol
+ Expand
3

Brain Lysate Preparation and FAAH Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples of brain lysates were prepared as described previously32 (link). Briefly, brain tissue was incubated in RIPA lysis buffer (150mM NaCl, 50mM Tris pH 8, 5mM EDTA, 1% Triton X-100, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulphate) with protease and phosphatase inhibitors (1:100, Calbiochem #539131 and #524625, respectively). Samples were triturated, rotated at 4°C for 30 minutes then spun down at 14,000 rpm for 10 minutes at 4°C. The supernatant was collected and cell debris discarded. Protein concentration was measured using a BCA kit. To measure FAAH levels, 10mg of forebrain lysate was resolved by SDS/PAGE electrophoresis (NuPAGE 10% Bis-Tris gel; Invitrogen #NP0315) and probed with antibodies: mouse monoclonal anti-FAAH (Abcam, ab54615; 1:500) and goat polyclonal anti-actin (Santa Cruz, sc-1616HRP; 1:5000) were used. As a positive control, 293T cells purchased from American Type Culture Collection (ATCC) were transfected with 1mg mouse FAAH cDNA clone (Origene, NM_010173), and lysates were processed in parallel. Forebrain lysate from FAAH knockout mice5 (link) were used as a negative control.
+ Open protocol
+ Expand
4

Skin Tissue Protein Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Skin tissues were homogenized with CelLyticTM MT Cell Lysis Reagent (Sigma-Aldrich). Ten micrograms of the protein lysate was resolved by SDS-PAGE, transferred to a PVDF membrane, and probed with antibodies against PCNA (1:1,000; ab29, Abcam), Cyp1a1 (1:1,000; #871, Daiichi Pure Chemical Co., Ltd., Tokyo, Japan), Cyp1b1 (1:1,000; ab185954, Abcam, Cambridge, UK), Actin (1:1,000; sc1616-HRP, Santa Cruz Biotechnology, Santa Cruz, CA), Pan-Ras (1:1000; Component of STA-440, Cell Biolabs, Inc., San Diego, CA), EGF receptor (1:1000; #2232, Cell Signaling Technology, Danvers, MA), phosphorylated (Y1086) EGF receptor (1:1,000; ab32086, Abcam), MEK1 (1:1,000; ab32091, Abcam), phosphorylated (E342) MEK1 (1:1,000; ab396379, Abcam), Cleaved Caspase-3 (1:5000; #9661, Cell Signaling Technology), Flag-M2 (1:1000; F3165, Sigma-Aldrich), and p16INK4a (1:500; sc1207, Santa Cruz Biotechnology). Specific antigen-antibody complexes were visualized using horseradish peroxidase-conjugated secondary antibodies and Chemi-Lumi One (Nacalai Tesque) or ImmunoStar reagent (Wako, Osaka, Japan).
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Intestinal Lineages

Check if the same lab product or an alternative is used in the 5 most similar protocols
Intestinal tissues were fixed in 4% formaldehyde and embedded in OCT for frozen sections. For immunofluorescence analysis, the following primary antibodies were used: goat anti-EGFP (1:400, Novus Biologicals: NB100-1770), rabbit anti-Chromogranin A (1:1000, Immunostar: #20085), rabbit anti-Muc2 (1:500, Santa Cruz: H-300), and rabbit anti-Lyz (1:500, Zymed Laboratories: 18-0039), rabbit anti-Neurod1 (1:250, Abcam: Ab109224). Alexa Fluor 488 or 594 conjugated secondary antibodies were used at a dilution of 1:800. Intestinal Alkaline Phosphatase activities were detected according to the manufacturer’s protocol (Vector Red AP Substrate Kit, Cat. #: SK-5100). Images were aquired using a Nikon Eclipse E600 microscope with imaging software of NIS-Elements AR 4.30.02.
Western blotting was performed as previous describe22 (link). In brief, equal amount of proteins was separated by SDS-PAGE and eleterotransferred onto a nitrocellulose membrane. Nonspecific binding to the membrane was blocked with a 3% milk solution in phosphate-buffered saline (PBS) containing 0.1% NP-40 prior to incubation with an anti-Neurod1 antibody (1:1,000; Abcam clone #Ab109224) or anti-actin antibody (1:2,000, Santa Cruz: sc-1616 HRP). An enhanced chemiluminescence (ECL) kit (Amersham) was used for detection of protein.
+ Open protocol
+ Expand
6

Western Blot Analysis of c-Fos and c-Jun

Check if the same lab product or an alternative is used in the 5 most similar protocols
After of treatment with 10 ng/ml PMA and 50 μM SR11302, SiHa, HeLa, C-33A and HaCaT cells were harvested and proteins were isolated for western blot assays. IgG mouse monoclonal antibodies SC-166940HRP (E8) and SC-74543HRP (G4) were used to detect human c-Fos and c-Jun proteins respectively. Human beta-actin protein was detected using IgG polyclonal antibody sc-1616-HRP (Santa Cruz, Biotechnology, Santa Cruz, CA). After the peroxidase coupled secondary goat antibody mouse anti-IgG was added, bound antibodies and protein were detected by enhanced chemiluminescence using the reagent SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific, Rockford, IL, USA). The membranes were subjected to autoradiography with an intensifier screen.
+ Open protocol
+ Expand
7

Brain Lysate Preparation and FAAH Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples of brain lysates were prepared as described previously32 (link). Briefly, brain tissue was incubated in RIPA lysis buffer (150mM NaCl, 50mM Tris pH 8, 5mM EDTA, 1% Triton X-100, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulphate) with protease and phosphatase inhibitors (1:100, Calbiochem #539131 and #524625, respectively). Samples were triturated, rotated at 4°C for 30 minutes then spun down at 14,000 rpm for 10 minutes at 4°C. The supernatant was collected and cell debris discarded. Protein concentration was measured using a BCA kit. To measure FAAH levels, 10mg of forebrain lysate was resolved by SDS/PAGE electrophoresis (NuPAGE 10% Bis-Tris gel; Invitrogen #NP0315) and probed with antibodies: mouse monoclonal anti-FAAH (Abcam, ab54615; 1:500) and goat polyclonal anti-actin (Santa Cruz, sc-1616HRP; 1:5000) were used. As a positive control, 293T cells purchased from American Type Culture Collection (ATCC) were transfected with 1mg mouse FAAH cDNA clone (Origene, NM_010173), and lysates were processed in parallel. Forebrain lysate from FAAH knockout mice5 (link) were used as a negative control.
+ Open protocol
+ Expand
8

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was prepared from the L4/L5 lumbar spine segment of mice at ZT10 and cultured astrocytes using CelLytic MT (Sigma-Aldrich) according to the manufacturer's instructions. Denatured samples containing 10–30 μg of protein were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS–PAGE) and then transferred onto poly vinylidene fluoride (PVDF) membranes. Membranes were reacted with primary antibodies against α1D-AR (1:1,000; sc-390884; Santa Cruz Biotechnology), PER2 (1:3,000; 313132A3; Alpha Diagnostic International, San Antonio, TX, USA), and β-ACTIN (1:10,000; sc-1616-HRP; Santa Cruz Biotechnology). Specific antigen–antibody complexes were visualized using horseradish peroxidase-conjugated secondary antibodies and ImmunoStar reagent (FUJIFILM Wako Pure Chemical). The visualized images were scanned using an ImageQuant LAS4010 (GE Healthcare, Tokyo, Japan).
+ Open protocol
+ Expand
9

Western Blot Analysis of Spinal Cord

Check if the same lab product or an alternative is used in the 5 most similar protocols
Nuclear and cytosolic fractions of the spinal cords of mice were prepared at six time points. Membrane and cytosolic fractions of cultured astrocytes were also prepared by the same procedure. A total of 20 μg protein lysates was then resolved by 10% SDS-PAGE, transferred to a PVDF membrane, and probed with rabbit monoclonal antibodies against SGK-1 (1:1,000; ab32374, Abcam, Cambridge, UK), GCR (1:1,000; sc1002, Santa Cruz Biotechnology, Santa Cruz, CA), Pannexin-1 (1:1,000; ab124131, Abcam), Actin (1:1,000; sc1616-HRP, Santa Cruz Biotechnology) or POL2 (1:1,000; sc900, Santa Cruz Biotechnology). The specificities of antibodies for their target proteins have been validated in previous studies58 (link)59 (link)60 (link). Specific antigen–antibody complexes were visualized using horseradish peroxidase-conjugated secondary antibodies and a chemiluminescence reagent (Nacalai Tesque, Kyoto, Japan).
+ Open protocol
+ Expand
10

Quantification of TRF2 Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blots were performed following Bio-Rad protocol. Briefly, 20 µg proteins were electrophoresed in SDS-PAGE (SDS-Polyacrylamide 10%) under denaturing conditions, then transferred to a PVDF membrane (Polyvinylidin Difluoride) (Amersham Hybond TM P + , GE Healthcare) or nitrocellulose, which were hybridized with mouse monoclonal anti-TRF2 antibody (4A794, Upstate), the Anti-TRF2 Thr-188P polyclonal antibody and anti-actin HRP (SC1616-HRP, Santa-Cruz). TRF2 was revealed by the secondary antibody goat anti-mouse IgG-HRP (ab6789, abcam) using the ECL Western Blotting detection reagent. Western-blot membranes were analysed using FluorChem software program.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!