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Topspin v1

Manufactured by Bruker
Sourced in Spain

TopSpin v1.3 is a software package developed by Bruker for the acquisition and processing of nuclear magnetic resonance (NMR) data. It provides the core functions necessary for controlling NMR spectrometers and analyzing the resulting spectra.

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2 protocols using topspin v1

1

NMR Characterization of Hydroxyprotoilludene

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All NMR spectra were recorded on a DRX 500-MHz NMR spectrometer (Bruker, Billerica, MA, USA) using a 5-mm BBO probe with a z-gradient. Hydroxyprotoilludene samples were dissolved in deuterated dichloromethane to a final concentration of ~ 50 mM and were calibrated against the solvent signals at 5.32 and 54.00 ppm. 13C-NMR spectra was acquired by conducting 1000 scans with a 30° pulse and a delay of 2 s. 13C-DEPT-135 spectra was also acquired by conducting 400 scans. All 2D spectra were acquired using Bruker standard pulse programs. The DQF-COSY and gs-NOESY spectra were measured in 512 increments, with two or four scans per increment, respectively. A mixing time of 600 ms was used for the acquisition of the NOESY spectrum. For heteronuclear correlation, the gs-HSQC and gs-HMBC spectra were measured in 512 increments, with four or eight scans per increment, respectively. The spectra were optimized for 1J and nJ couplings of 140 and 8 Hz, respectively. The data were processed using TopSpin v1.3 (Bruker) and MestReNova v8.0 (MestreLab Research, Santiago de Compostela, Spain).
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2

NMR Analysis of RPA70N-Tag(84-130) Binding

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NMR experiments were performed at 25°C using Bruker Avance 600-MHz NMR spectrometers equipped with a 5-mm single-axis z gradient cryoprobe. Spectra were recorded using band-selective, optimized flip angle short transient, 1H, 15N-heteronuclear multiple-quantum coherence (SOFAST-HMQC) [29 (link)]. 1024 data points were acquired in the direct 1H dimension and 96 points in the indirect 15N dimension, with a recycle delay of 200 ms. 15N-enriched RPA70N was prepared at 26 μM in buffer containing 25 mM Tris-Cl at pH 7.5, 100 mM NaCl and 1 mM DTT. A series of 15N-1H HSQC spectra were collected at RPA70N/Tag(84–130) ratios of 1:0, 1:0.5. 1:1, 1:2, 1:4, 1:8, 1:12 and 1:16. All spectra were processed with TOPSPIN v1.3 (Bruker, Billerica, MA) and analyzed with Sparky v3.1 (University of California, San Francisco, CA). 1H and 15N backbone NMR assignments for RPA70N were reported previously [30 (link)]. Chemical shift perturbations (Δδ) were calculated using a weighted average of net changes in chemical shift in both 1H and 15N induced by binding of Tag(84–130) using following equation:
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