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5 protocols using anti nf κb p65 antibody

1

Quantifying HMGB1 and NF-κB in Lung Tissue

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In short, HMGB1 and nuclear factor (NF)-κB proteins extracted from lung tissue were resolved by SDS-PAGE and transferred to PVDF membranes. The membranes were incubated with specific primary antibodies (anti-HMGB1 antibody from Invitrogen Co., CA and anti-NF-κB p65 antibody from Thermo Fisher Scientific Co., CA) followed by HRP-conjugated secondary antibody (Jackson ImmunoResearch Co., USA). Beta-actin (1:5000; Thermo Fisher Scientific Co., CA) was applied as endogenous control. Finally, blots were detected by NIH Image J software (NIH, Bethesda, MD, USA).
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2

Immunohistochemical Analysis of NF-κB and TLR4

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Cardiac sections were used for IHC staining. Hence, 3% hydrogen peroxide (H2O2) in methanol was used to block the endogenous peroxidase enzyme in the obtained sections at 21–25 °C for 30 min, followed by rinsing three times in phosphate-buffered saline (PBS). Afterward, the sections were incubated with the antibodies, stored overnight at 4 °C in a humidified chamber, and then goat anti-rabbit-horseradish peroxidase (HRP)-conjugated IgG antibody (1:1000; cat. no. ab6721; Abcam) was added for 1 h at 37 °C. The primary antibodies against rabbit polyclonal anti NF-κBp65 antibody (Thermo Fisher Scientific, USA), and anti-TLR4 antibody (Abcam, UK), were used following the procedures described previously [33 (link)]. Finally, the sections were developed with 1% diaminobenzidine for 5 min, counterstained with 1% hematoxylin for 2 min at 21–25 °C, and mounted with neutral gum. Cardiac slices were imaged using a microscope fitted with a digital camera (Nikon Instruments Inc., Tokyo, Japan). NIS-Elements software was used for the semi-quantitative analysis of NFκB and TLR4. First, the area of the immunohistochemical reaction in the picture was selected. Then, the average optical density in the selected area of each picture was measured. Positive cells were counted under 400× magnification observing 10 consecutive non-overlapping fields per animal in a blinded manner
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3

Apoptosis Detection in Alzheimer's Model

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25-35 (Lot: Y-0044) was purchased from BIOSS Biotech Limited Company (Beijing, China). The Hoechst 33342/PI apoptotic assay kit was purchased from Sigma-Aldrich (St. Louis, MO, USA). The TUNEL apoptosis detection kit was purchased from BOSTER Biotech Limited Company (Wuhan, Hubei, China). The Annexin V-FITC/PI apoptotic detection kit was purchased from KeyGEN Biotech Corp., Ltd. (Nanjing, China). Rhodamine 123 was purchased from Yansheng biochemical reagent Co., Ltd. (Shanghai, China). The RT-PCR kit was purchased from TransGen Biotech Limited Company (Beijing, China). 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI) was purchased from Sigma-Aldrich (Milan, Italy). Anti-NF-κBp65 antibody was purchased from Invitrogen (Carlsbad, CA, USA). The CO2 incubator and ultra-low temperature freezer were purchased from SANYO Electric Co., Ltd. (Moriguchi, Japan). The laser scanning confocal microscope was purchased from Leica DMIRB (Rueil Malmaison, France). The flow cytometer was purchased from Becton-Dickinson Labware (Franklin Lakes, NJ, USA). The gel imaging and analysis system ChemiDocXRS were purchased from Bio-Rad Laboratories, Inc. (Berkeley, CA, USA). The TC-512PCR amplification instrument was purchased from TECHNE (London, UK).
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4

Immunofluorescent Visualization of NF-κB

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Cells seeded on coverslips were fixed with 4% paraformaldehyde for 15 min, permeabilized in 0.2% Triton X-100 for 5 min, and blocked with 5% BSA (Sigma Aldrich) diluted with PBS for 1 h. Then, cells were immunostained with an anti-NF-κB p65 antibody (CST #8242) for 2 h followed by an Alexa Fluor 488-conjugated secondary antibody (Invitrogen) for 1 h. Nuclei were counterstained with DAPI (Sigma Aldrich) for 5 min. Cells were extensively washed with PBS for three times between each step. Slides were then mounted using Aqua-Poly/Mount (Dako). Images were captured using an Olympus SpinSR10 Confocal System with 60X objective and Olympus cellSens Dimension software. All images are representative of three independent experiments.
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5

NF-κB Activation Inhibition Assay

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BMDMs (3 × 104 cells/well) seeded into 8-well glass chamber plates were incubated overnight in the presence of 30% of L929-conditioned medium. Cells were pretreated with ChondroT or its constituent herbs for 4 h, and were stimulated with 100 ng/mL of RANKL for 30 min. Cells were then fixed with 4% of paraformaldehyde, and permeabilized using 0.1% of triton. A polyclonal anti-NF-κB p65 antibody (Invitrogen, Carlsbad, MA, USA) and an Alexa Fluor 488-conjugated anti-rabbit IgG second antibody (Molecular Probes Invitrogen, MA, USA) were used for the detection of NF-κB p65 protein. Cells were then mounted with anti-fade reagent with DAPI. Bay 11–7082 was used as a positive control of NF-κB inhibitors. Fluorescence images were photographed with a fluorescence microscope (Nikon DS-Ri2 microscope camera, Tokyo, Japan) [26 (link)].
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