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Mx3005p platform

Manufactured by Agilent Technologies
Sourced in Denmark, China

The Mx3005P platform is a real-time PCR system designed for gene expression analysis, genotyping, and other molecular biology applications. It features multiple detection channels, temperature control, and data analysis software to support a variety of experimental workflows.

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2 protocols using mx3005p platform

1

SERT Gene SNP Genotyping in MMVD

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DNA was isolated from 200 μL EDTA‐anticoagulated blood with a DNA extraction kit (Epicenter Kit, Nordic Biolabs, Sweden) and kept at −20°C. Three selected SNPs in the SERT gene with possible functional impact and association with MMVD were: c.814insG (p.Lys272Arg), c.1193delT (p.Val397Gly), c.1324G>A (p.Gly442Ser; Table 1).19 Single nucleotide polymorphism genotyping was performed by TaqMan assays established based on sequence information extracted from Ensembl, comprising 100 to 200 bp sequences on both sides of the polymorphisms. Primers and probes were designed for wild type and mutated sequences, respectively, by Thermo Fischer Scientific, Denmark using VIC for wild type alleles and FAM for variant alleles. TaqMan real‐time PCR was carried out as follows on the Mx3005P platform (Agilent, Glostrup, Denmark): 1 μL of genomic DNA (20‐25 ng/μL) was amplified in a total volume of 10 μL reaction mastermix containing 5.0 μL TaqMan Universal Mix, 0.25 μL TaqMan enzyme (Thermo Fischer Scientific, Denmark) and 3.75 μL H2O. PCR conditions were: 1 cycle of 50°C for 2 minutes, 1 cycle of 95°C for 10 minutes, and 45 cycles of 92°C for 20 seconds followed by 60°C for 1 minute. Water was included as negative control and results were analyzed by MxPro qPCR Software (Agilent, Glostrup, Denmark).
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2

Extraction and Detection of Mycoplasma pneumoniae

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The MP reference strain (M129), five clinical isolates of MP and 14 strains of common pathogenic bacteria were obtained from American Type Culture Collection (ATCC) and Beijing Children’s Hospital (BCH; Table 1). After incubation with 20 μL proteinase K and 200 μL buffer AL at 56°C for 10 min, genomic DNA was extracted and purified from those strains using the QIAamp DNA Mini Kits according to the commercial instruction. A total of 201 clinical samples (128 were oropharyngeal swab, 40 were bronchoalveolar lavage fluid and 33 were sputum) were collected from suspected cases of MP infection at BCH. These respiratory samples were tested by real-time PCR with commercially available diagnostic kits (Mole Bio-Science Co., Ltd., Jiangsu, China) on the Agilent Mx3005P platform. Among them, 108 clinical samples were tested positive for MP infection. After clinical and laboratory diagnoses, DNA templates were extracted from respiratory samples using the method described above. The extracted DNA samples were stored at −20°C before use.
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