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3 protocols using halofuginone

1

Reductionist Corneal Stromal Wounding Assay

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The human keratocytes were cultured in serum-free medium as described above (with the negative control as the untreated human keratocytes). First, the upper concentrations of the reference bioactives were set according to the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell-viability assay (see Supplementary Fig. 2). A reductionist corneal stromal wounding model was initiated by addition of 10 ng/ml TGF-β215 (link) (R&D systems, Minneapolis, USA) into the DMEM for 48 h (as the positive control). These ‘activated keratocytes’ were also treated with the different bioactives, which were added at the time of the ‘wounding’, with parallel incubation of the wound model for 48 h, due to the fast transient nature of these keratocytes. The bioactives used were: 10 ng/ml, 5 ng/ml recombinant IGF-1 (R&D systems, Minneapolis, USA), 10 ng/ml, 5 ng/ml halofuginone (Santa Cruz Biotechnology, Heidelberg, Germany), and 10 nM, 5 nM SAHA (Tocris Bioscience, Bristol, UK). The 10 ng/ml IGF-1 was also tested in combination with one concentration of each of the antifibrotics: 10 ng/ml halofuginone, and 10 nM SAHA. After completion of the first proliferative assays, the concentrations of halofuginone and SAHA used for the further experiments were chosen as 5 ng/ml and 10 nM, respectively. These human keratocytes were also used for further testing, as described below.
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2

Pharmacological Modulation of Cell Signaling

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Cycloheximide (C1988, Sigma), 4′,6-diamidino-2-phenylindole (DAPI, D1306, Thermo Fisher), Halofuginone (sc-211579, SantaCruz), Nintedanib (S1010, Selleck Chemicals), Pirfenidone (P2116, Sigma), S3I-201 (SML0330, Sigma), Stattic (S7947, Sigma), U0126 (9903, CST), Thapsigargin (12758, CST), Tunicamycin (12819, CST).
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3

Innate Immune Stimuli Combination Protocol

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300 ng/mL Pam3Cys-SKKKK (EMC-microcollections L2000), 20 μg/mL LMW polyinosinicpolycytidylic acid (InvivoGen tlrl-picw), 100 ng/mL lipopolysaccharides E. coli 055:B5 (Sigma L6529), 5 μg/mL FLA (B. subtilis) ~32 kDa Gram-positive flagellin (InvivoGen FLA-BS), 10 μg/mL R848 imidazoquinoline compound (InvivoGen tlrl-r848), 5 μM CpG (ODN 1826) unmethylated CpG dinucleotides (InvivoGen tlrl-1826), 10 μg/mL muramyl dipeptide (InvivoGen tlrl-mdp), 10 μg/mL synthetic analog of trehalose-6,6- dimycolate (TDB, Trehalose-6,6-dibehenate) (InvivoGen tlrl-tdb), MOI ~10 Sendai virus (Sendai strain: Cantell) (ATCC VR-907), 5 μg/mL zymosan (S. cerevisiae) (Sigma Z4250), 20 μg/mL HT-DNA (herring testis DNA) (Trevigen). DMSO (Sigma), 10 μM forskolin (Cayman Chemical), 25 μM tert-Butylhydroquinone (tBHQ) (Sigma), 5 μM prostaglandin E2 (pGE2) (Sigma), 1 μM torin (Axon Medchem), 10 μM halofuginone (Santa Cruz Biotechnology), 100 nM bafilomycin (Sigma), 20 μM ZVAD pan-caspase inhibitor (Calbiochem), caspase I inhibitor IV (Calbiochem), 5 μg/mL brefeldin A, 5 μg/mL tunicamycin (Sigma).
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