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Prism 3130xl dna sequencer

Manufactured by Thermo Fisher Scientific
Sourced in United States

The PRISM 3130xl DNA Sequencer is a capillary electrophoresis-based genetic analysis instrument designed for DNA sequencing, fragment analysis, and genotyping applications. It features 16 capillaries and utilizes dye-terminator chemistry for DNA sequencing.

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3 protocols using prism 3130xl dna sequencer

1

Mango SSR Marker Amplification and Characterization

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We preliminary tested 67 SSR markers that originated from mango. Of those, 21 were excluded because of no amplification, unstable amplification of the target band or the presence of monomorphic fragments. We used the remaining 46 SSR markers (Table 2), comprising 26 from Ravishankar et al. (2011) (link), 6 from Schnell et al. (2005) , and 14 from Viruel et al. (2005) .
SSR markers were amplified in a 5-μL reaction mixture, containing 2.5 μL of Multiplex PCR Master Mix with HotStar Taq DNA Polymerase (Qiagen), 5 pmol of each primer (forward, fluorescently labeled with FAM or HEX; R, unlabeled), and 5 ng of genomic DNA. The PCR profile consisted of initial denaturation for 15 min at 95°C; 35 cycles of denaturation for 60 s at 94°C, annealing for 60 s at 55°C, and extension for 60 s at 72°C; and a final extension for 7 min at 72°C. The amplified PCR products were separated and detected in a PRISM 3130xl DNA sequencer (Applied Biosystems, USA). The sizes of the amplified bands were scored against internal standard DNA (400HD-ROX, Applied Biosystems) in GeneScan software (Applied Biosystems).
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2

PPP2R3C Gene Sequence Protocol

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All the coding exons and intron–exon boundaries of the PPP2R3C gene were amplified by the PCR (6 (link)). Sequence reactions were run on an ABI Prism 3130xl DNA Sequencer and analysed by Seqscape sequencing analysis software, version 2.7 (Applied Biosystems).
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3

Genotyping Hydrangea Flower Phenotype

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For assessment of DNA markers for the double flower phenotype, 35 H. macrophylla accessions were used. Genotyping for J01 was performed as described above. Genotyping for S01 was performed by fragment analysis as follows. PCR amplification was performed in a 10-μL reaction mixture containing 5 μL of GoTaq Master Mix (Promega), 5 pmol FAM-labeled universal primer (5′ -FAM-gctacggactgacctcggac -3′), 2.5 pmol forward primer with universal adapter sequence (5′-gctacggactgacctcggacCATCATTAATAGTGGTGACAG -3′), 5 pmol reverse primer, and 5 ng of template DNA. DNA was amplified in 35 cycles of 94°C for 1 min, 55°C for 1 min, and 72°C for 2 min; and a final extension of 5 min at 72°C. The amplified PCR products were separated and detected in a PRISM 3130xl DNA sequencer (Applied Biosystems, USA). The sizes of the amplified bands were scored against internal-standard DNA (400HD-ROX, Applied Biosystems, USA) by GeneMapper software (Applied Biosystems, USA).
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