SSR markers were amplified in a 5-μL reaction mixture, containing 2.5 μL of Multiplex PCR Master Mix with HotStar Taq DNA Polymerase (Qiagen), 5 pmol of each primer (forward, fluorescently labeled with FAM or HEX; R, unlabeled), and 5 ng of genomic DNA. The PCR profile consisted of initial denaturation for 15 min at 95°C; 35 cycles of denaturation for 60 s at 94°C, annealing for 60 s at 55°C, and extension for 60 s at 72°C; and a final extension for 7 min at 72°C. The amplified PCR products were separated and detected in a PRISM 3130xl DNA sequencer (Applied Biosystems, USA). The sizes of the amplified bands were scored against internal standard DNA (400HD-ROX, Applied Biosystems) in GeneScan software (Applied Biosystems).
Prism 3130xl dna sequencer
The PRISM 3130xl DNA Sequencer is a capillary electrophoresis-based genetic analysis instrument designed for DNA sequencing, fragment analysis, and genotyping applications. It features 16 capillaries and utilizes dye-terminator chemistry for DNA sequencing.
3 protocols using prism 3130xl dna sequencer
Mango SSR Marker Amplification and Characterization
SSR markers were amplified in a 5-μL reaction mixture, containing 2.5 μL of Multiplex PCR Master Mix with HotStar Taq DNA Polymerase (Qiagen), 5 pmol of each primer (forward, fluorescently labeled with FAM or HEX; R, unlabeled), and 5 ng of genomic DNA. The PCR profile consisted of initial denaturation for 15 min at 95°C; 35 cycles of denaturation for 60 s at 94°C, annealing for 60 s at 55°C, and extension for 60 s at 72°C; and a final extension for 7 min at 72°C. The amplified PCR products were separated and detected in a PRISM 3130xl DNA sequencer (Applied Biosystems, USA). The sizes of the amplified bands were scored against internal standard DNA (400HD-ROX, Applied Biosystems) in GeneScan software (Applied Biosystems).
PPP2R3C Gene Sequence Protocol
Genotyping Hydrangea Flower Phenotype
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