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Du 800 uv vis spectrometer

Manufactured by Beckman Coulter
Sourced in Japan, United States

The DU 800 UV-vis spectrometer is a laboratory instrument manufactured by Beckman Coulter. The core function of the DU 800 is to measure the absorbance or transmittance of samples across the ultraviolet and visible spectrum of light.

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10 protocols using du 800 uv vis spectrometer

1

Polymeric Micelle Characterization and Stability

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The polymeric micelles were prepared by the solvent evaporation method. The amphiphilic triblock copolymer (total mass 0.015 g) was dissolved in 5 mL of acetone/THF mixture (1:1), and the solution was added dropwise to 15 mL of deionized water at room temperature under stirring (800 min−1). The resulting dispersion was stirred for 30 min and the organic solvent was evaporated using a rotary vacuum evaporator to afford stable aqueous micellar solution with a concentration of 1 gL−1.
The critical micelle concentration (CMC) was determined spectrophotometrically by a method employing the hydrophobic dye 1,6-diphenyl-1,3,5-hexatriene (DPH). Aqueous copolymer solutions (2 mL) with different concentrations (between 0.005 and 1 gL−1) were prepared and methanol solution of DPH (20 μL, 0.4 mM) was added to each sample. The samples were incubated in a dark place for 16 h at room temperature before recording the UV–vis absorption spectra of DPH in the wavelength range 250–600 nm at 25 °C (Beckman Coulter DU 800 UV–vis spectrometer). The CMC values were determined as the inflection points of the absorbance intensity (at 356 nm) vs. polymer concentration curve.
The resistance of micelles against degradation in an acidic medium was assessed by adding DPH-loaded micelles in a buffer with pH = 1.2. After storage for 3 h, the UV–vis absorption spectrum of DPH was recorded.
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2

Characterization of C3N4-Based Nanomaterials

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The morphologies of obtained samples were characterized using a transmission electron microscope (Tecnai G2 F30, FEI, USA) operated on 300 kV. The crystal phases of samples were measured using a Bruker D8 Advance X-ray diffractometer (Bruker, Germany) with a 2θ range from 10° to 80° with Cu Kα irradiation. The nitrogen sorption isotherms were measured with an Autosorb-iQ2 (Quantachrome, USA) analyzer. X-ray photoelectron spectroscopy (XPS) analysis was conducted with a Quantera II (ULVAC-PHI, Japan) X-ray photoelectron spectrometer equipped with an Al Kα X-ray radiation source. FT-IR spectra were characterized on a Bruker Tensor 27 FT-IR spectrometer (Thermoelectron, USA) with the KBr pellet technique. The thermal stabilities of C3N4-NS and C3N4-NS@CRL were studied with a thermogravimetric (TGA) analyzer (TAQ50, Netzsch, Germany) at a heating rate of 5 °C min−1 in a N2 atmosphere. The UV-vis absorption spectra were recorded using a DU 800 UV-vis spectrometer (Beckman Coulter, Japan).
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3

Thermodynamic Analysis of Biomolecule Melting

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Measurements were carried out using a DU800 UV-Vis spectrometer (Beckman Coulter, Fullerton, CA). Samples (1- 2 μM) were heated gradually from 6 to 80°C, and absorbance at 260 nm was continuously recorded. The measured melting curves were analyzed as described [23 (link)] to obtain the standard state enthalpy (ΔH0) and entropy (ΔS0) of the transition, from which the standard state free energy of transition at 37°C (ΔG037°C) was computed.
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4

Optical Melting Experiments on Nucleic Acid Duplexes

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Optical melting experiments were conducted on three additional duplexes, (5′UGUCGAUA)2, (5′AUAGCUGU)2 and (5′AUUCGAGU)2, following standard protocols described in (89 (link)). Oligonucleotides were purchased from Integrated DNA Technologies including purification with standard desalting procedures and assessment of purity by mass spectrometry. Oligonucleotides were dissolved in milliQ water, and the absorbance at 260 nm at 80°C was measured. The appropriate amount of oligonucleotide was dried in a speed vac and resuspended in standard melting buffer of 1 M NaCl, 20 mM sodium cacodylate, pH 7, and 0.5 mM Na2EDTA. Optical melting experiments were conducted in a Beckman DU800 UV-Vis spectrometer with a custom sample holder and cuvettes at 0.1 cm and 1.0 cm path lengths. Absorbance vs. temperature was measured at 280 nm. Data was analyzed with Meltwin software (52 (link)).
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5

Quantifying DNA Unwinding via 2AP

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2AP measurements were conducted using a Molecular Devices SpectraMax® iD5 plate reader. 100uL of purified 2AP-modified duplex DNA or dFnCas12a ternary complex was transferred to sample wells in a black Corning® 384 well flat bottom polystyrene plate (Mfr No. 35766). Utilizing the onboard monochromator, the excitation was fixed at 315 nm with the fluorescence emission maxima collected at 368nm. In parallel, absorbance measurements on the corresponding samples were obtained on a DU800 UV−Vis spectrometer (Beckman Coulter, Fullerton, CA). Following a prior report (41 (link)), the background-corrected emission at 368 nm (F368, obtained by subtracting the corresponding buffer emission) was normalized by the 260 nm absorbance (A260) of the same sample to obtain:
where ϵ is the extinction coefficient of the particular sample, ϵ2AP is the extinction coefficient of 2AP at 315 nm, φ is the quantum yield of 2AP, and K is a constant independent of the sample concentration. Furthermore, one can normalize the 2AP quantum yield of a given sample to that of the corresponding free duplex as:
, which specifically reports on the 2AP quantum yield while minimizing the impact of local DNA sequence variations, was used to access DNA unwinding.
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6

Colorimetric Quantification of Iron Release

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Detection of Fe-release from FMX was accomplished by diluting the appropriate FMX samples into a ferrozine buffer (5 mM ferrozine diluted in double-distilled H2O) ± 5 mM ascorbate. The formation of the Fe2+-ferrozine complex, absorption at 562 nm (ε562 = 27.9 mM−1 cm−1) [16 ], was evaluated using a Beckman DU800 UV–Vis spectrometer. Ferrozine buffer containing 5 mM ascorbate was used to reduce all the chelatable iron to Fe2+ ([Fe]total). The amount of Fe3+ released was calculated as the difference between [Fe]total (ferrozine +5 mM ascorbate) and [Fe2+] (ferrozine alone) (equation [2]):
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7

Optical Melting of DNA/RNA Repeats

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Optical melting experiments
of 5′-biotin-r(CGG)12, d(CCG)8, and d(CCG)12 were completed in 1X Melting Buffer (8 mM NaH2PO4, pH 7.0, 185 mM NaCl, and 1 mM EDTA) using a Beckman
Coulter DU800 UV–vis spectrometer with an attached peltier
heater. Melting curves of absorbance versus temperature were acquired
at 260 nm with heating rate of 1 °C/min from 35 to 92 °C
for r(CGG)12 and 15 to 80 °C for d(CCG)8 and d(CCG)12. Melting curves were fit to a two-state
model using the MeltWin program (http://www.meltwin.com) as previously described.60 (link) The results
of optical melting experiments including normalized melting curves
are provided in Supplementary Tables S-1–S-3
and Figure S-3
.
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8

Determination of Critical Micelle Concentration

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Furthermore, 20 μL of a 0.4 mM solution of 1,6-diphenyl-1,3,5-hexatriene (DPH) in methanol was added to 2 mL micellar dispersions with increasing concentrations in the range 9.765 × 10−4–1.0 mg·mL−1. The samples were incubated in the dark for 24 h at room temperature. UV-vis absorption spectra of DPH in the wavelength interval λ = 300–500 nm at room temperature were recorded on a Beckman Coulter DU 800 UV-vis spectrometer. The intensities of the absorption peak at 356 nm were plotted against the polymer concentration. The CMC value was determined as the break in the absorbance intensity versus the concentration curve.
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9

Comprehensive Materials Characterization for Research

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N2 adsorption-desorption analysis was measured on a Beckman Coulter SA 3100 plus surface area analyzer (Beckman Coulter, CA, USA) at 77K. The surface area was evaluated from the adsorption branch in the relative pressure range of 0.05–0.15 using the Brunauer-Emmett-Teller (BET) method. The surface morphologies of the samples were observed by scanning electron microscopy (SEM; SU8010, Hitachi, Tokyo, Japan) at 200 kV and transmission electron microscopy (TEM; TECNAI G2 20S-TWIN, Hillsboro, OR, USA). Fourier transform infrared (FT-IR) spectra were recorded on a TENSOR 27 FTIR spectrometer (Bruker, Karlsruhe, Germany). The UV-vis spectra were recorded using a DU 800 UV-vis spectrometer (Beckman Coulter, CA, USA).
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10

Oligonucleotide Melting Curve Analysis

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Optical melting experiments were conducted following standard protocols described in (78) . Oligonucleotides were purchased from Integrated DNA Technologies including purification with standard desalting procedures and assessment of purity by mass spectrometry. Oligonucleotides were dissolved in milliQ water, and the absorbance at 260 nm at 80 °C was measured. The appropriate amount of oligonucleotide was dried in a speed vac and resuspended in standard melting buffer of 1 M NaCl, 20 mM sodium cacodylate, pH 7, and 0.5 mM Na 2 EDTA. Optical melting experiments were conducted in a Beckman DU800 UV-Vis spectrometer with a custom sample holder and cuvettes at 0.1 cm and 1.0 cm path lengths. Absorbance vs. temperature was measured at 260 and 280 nm.
Data was analyzed at 280 nm with Meltwin software (51) .
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