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Accela hplc system

Manufactured by Thermo Fisher Scientific
Sourced in Germany, United States

The Accela HPLC system is a high-performance liquid chromatography instrument designed for efficient and reliable separation and analysis of a wide range of chemical compounds. The system features a high-pressure pump, autosampler, column oven, and a UV-Vis or diode array detector to provide accurate and reproducible results.

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60 protocols using accela hplc system

1

Quantifying ATP and NADH in C. acetobutylicum

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During batch culture using glucose as the sole carbon source, C. acetobutylicum cells were collected at 8, 16 and 24 h by centrifugation at 10,000×g for 3 min at − 10 °C. The resulting cell pellets were quenched immediately with 500 μL solution mixture of methanol, acetonitrile and water (40:40:20, v/v, − 40 °C), and then frozen in liquid nitrogen for preparing crude extracts. According to our previous study [22 (link)], LC–MS/MS analysis was conducted for ATP quantification with an ACCELA HPLC system (Thermo Scientific, CA) equipped with an XBridge BEH Amide column (100 mm × 2.1 mm I.D., 2.5 μm, Waters, Ireland). Mass monitoring was achieved using a TSQ Quantum Ultra triple quadrupole mass analyzer (Thermo Scientific, CA) equipped with a heated electrospray ionization source (HESI). NADH assay was performed using a commercial kit (Sigma, MO). Cell pellets were first lysed using a Qiagen Tissue Lyser LT (Qiagen, Germany) at 50 oscillations/s for 3 min in the NADH extraction buffers (Sigma, MO), the resulting lysate was then used for NADH quantification at 450 nm with an iMark™ microplate reader (Bio-Rad, CA).
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2

Analytical HPLC and LC-MS Characterization

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Analytical HPLC was performed on a Shimadzu LC-10Avp series HPLC system consisting of an autosampler, high-pressure pumps, column oven and PDA. HPLC conditions: C18 column (Eurospher 100-5, 250 × 4.6 mm) and gradient elution (MeCN/0.1 % (v/v) TFA 0.5/99.5 in 30 min to MeCN/0.1 % (v/v) TFA 100/0, MeCN 100 % for 10 min), flow rate 1 mL min−1. Preparative HPLC was performed on a Shimadzu LC-8a series HPLC system with PDA. LC-MS measurements were performed using an Exactive Orbitrap High Performance Benchtop LC-MS with an electrospray ion source and an Accela HPLC system (Thermo Fisher Scientific, Bremen). HPLC conditions: C18 column (Betasil C18 3 µm 150 × 2.1 mm) and gradient elution (MeCN/0.1 % (v/v) HCOOH (H2O) 5/95 for 1 min, going up to 98/2 in 15 min, then 98/2 for another 3 min; flow rate 0.2 mL min−1). NMR spectra were recorded on a Bruker AVANCE III 600 MHz instrument equipped with a Bruker cryo platform. The residual solvent signals were used as an internal reference.
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3

HPLC Purity Analysis of Final Product

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Purity determination of the final product was performed on a Thermo Scientific Accela HPLC system using Accela 1250 pump. The Thermo Accucore C18 RP HPLC column (150 mm × 2.1 mm, particle size 2.6 μm) was used. The UV absorption between 190 nm and 400 nm was monitored, and the purity was determined by the peak area at 254 nm. A gradient method was used. Solvent A, 0.1% formic acid(aq); Solvent B, 99.9% acetonitrile with 0.1% formic acid; 0–1 min, 1% B; 1–16 min., 1–100% B; 16–19 min, 100% B; 19.01–22 min, 1% B; Flow rate: 0.5 mL/min.
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4

Analytical and Preparative HPLC Characterization

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Analytical HPLC was performed on a Shimadzu LC-10Avp series HPLC system consisting of an autosampler, high-pressure pumps, column oven and photodiode array detector. HPLC conditions were as follows: C18 column (Eurospher 100-5, 250 × 4.6 mm) and gradient elution (MeCN/0.1% (v/v) trifluoroacetic acid (TFA) 0.5/99.5 in 30 min to MeCN/0.1% (v/v) TFA 100/0, MeCN 100% for 10 min), flow rate 1 ml min−1. Preparative HPLC was performed on a Shimadzu LC-8a series HPLC system with photodiode array detector. LC-MS measurements were performed using an Exactive Orbitrap High Performance Benchtop LC-MS with an electrospray ion source and an Accela HPLC system (Thermo Fisher Scientific, Bremen). HPLC conditions were as follows: C18 column (Betasil C18 3 μm 150 × 2.1 mm) and gradient elution (MeCN/0.1% (v/v) HCOOH (H2O) 5/95 for 1 min, going up to 98/2 in 15 min, then 98/2 for another 3 min; flow rate 0.2 ml min−1). For tandem mass spectrometry measurements, a Q Exactive Orbitrap mass spectrometer with an electrospray ion source (Thermo Fisher Scientific) was used. NMR spectra were recorded on a Bruker AVANCE III 600 MHz instrument equipped with a Bruker cryo platform. Spectra were normalized to the residual solvent signals. The infrared spectra were recorded on a JASCO FT/IR-4100 type A.
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5

Targeted Metabolomics Analysis by HPLC-Orbitrap MS

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An Accela HPLC system interfaced to an Exactive Orbitrap mass spectrometer (Thermo Fisher Scientific, Bremen, Germany) was used for the liquid chromatographic separations. ZIC-pHILIC (150 × 4.6 mm, 5 µm) and ACE C4 (150 × 3.0 mm, 3 µm) HPLC columns supplied by HiChrom (Reading, UK) were used. Samples were run on LC-MS under the following conditions: the ZIC-pHILIC mobile phase consisted of 20 mM ammonium carbonate in HPLC-grade water (A) and acetonitrile (B); the solvent gradient used was 80% B (0 min), 20% (30 min), 8% (31–36 min), and 80% (37–45 min) at a flow rate of 0.3 mL/min. For the ACE C4 column, the mobile phase was 1 mM acetic acid in water (A) and 1 mM acetic acid in acetonitrile (B). The solvent gradient used was 40% B (0 min), 100% (30–36 min) and 40% (37–41 min) at a flow rate of 0.4 mL/min. The nitrogen sheath and auxiliary gas flow rates were maintained at 50 and 17 arbitrary units. The electrospray ionisation (ESI) interface was employed in a positive/negative dual polarity mode, with a spray voltage of 4.5 kV for positive mode and 4.0 kV for negative mode, while the ion transfer capillary temperature was set at 275 °C. Full scan data were obtained in the mass-to-charge ratio (m/z) between 75 and 1200 amu for both ionisation modes. The data were collected and processed using Xcalibur 2.1.0 software (Thermo Fisher Scientific, Bremen, Germany).
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6

Quantitative Proteomic Analysis using MRM

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Raw data generated from LTQ-Orbitrap Velos were searched using Mascot 2.2 (Matrix Science, London, U.K.). The resulting DTA files were employed as input for processing in Skyline20 (link) to generate a list of fragment ions derived from targeted peptides. Four fragment ion pairs were selected for MRM transitions of each targeted peptide.
The same SILAC samples analyzed on LTQ-Orbitrap Velos were subjected to analysis on a TSQ-Vantage triple quadrupole mass spectrometer (Thermo Fisher Scientific) equipped with an Accela HPLC system with split nanoflow. The flow rate was approximately 300 nL/min, and a linear gradient of 5–35% acetonitrile in 0.1% formic acid was used. A spray voltage of 1.8 kV and a capillary temperature of 200 °C were employed, and a resolution of 0.7 full-width at half-maximum (fwhm) was set for ion isolation in both Q1 and Q3. The collision gas pressure in Q2 was set at 1.2 mTorr, and a scan width of 0.2 m/z and a cycle time of 5 s were used for data acquisition. Collision energy was optimized using the default setting in Skyline. Targeted peptides were quantified using Skyline, where the ratio of the light and heavy versions of each peptide was calculated from the mean ratios of peak areas found in the chromatograms for individual pairs of MRM transitions for the peptide.
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7

Lipid Extraction and Analysis by HPLC-MS

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Tissues were homogenized in CHCl3 (10 ml), then MeOH (5 ml), H2O (2.5 ml) and HCl 2 N were added and the lipids extracted by vigorous mixing. The organic layer was recovered and dried under N2. The resulting lipid fraction was pre-purified by solid-phase extraction over silica, and NAPEs were eluted with CHCl3-MeOH (6:4, v/v). The resulting lipid fraction was analyzed by HPLC-MS using a LTQ Orbitrap mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) coupled to an Accela HPLC system (Thermo Fisher Scientific). Analyte separation was achieved by using a C-18 Kinetex C-18 column (5 μm, 4.6 × 150 mm; Phenomenex, Utrecht, Netherlands) and a C-18 pre-column. Mobile phases A and B were composed of MeOH-H2O-NH4OH (75:25:0.1, v/v/v) and MeOH-NH4OH (100:0.1, v/v), respectively. The gradient (0.5 ml min−1) was as follows: from 100% A to 100% B in 15 min, followed by 10 min at 100% B and subsequent re-equilibration at 100% A. Mass spectrometry analysis in the negative mode was performed with an ESI source. The measurement of eCB were generated as previously described32 (link), and the data were normalized to tissue sample weight.
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8

HPLC-ELSD and LC-MS/MS Analysis of Colistin Metabolites

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Cleavage of colistin and production of the concomitant metabolites in the aforementioned reaction were analyzed by high-performance liquid chromatography (HPLC) using a Kinetex C-18 column (Phenomenex, USA) and an Alltech 3300 Evaporative Light Scattering Detector (ELSD) (BUCHI, Switzerland). The mobile phase comprised a gradient of 24 to 29% acetonitrile (J.T. Baker) and 0.021 to 0.024% trifluoroacetic acid (Sigma-Aldrich) with a flow rate of 1.0 mL/min for 10 min. Detection was performed at 60 °C and 1.5 mL/min nitrogen gas flow by ELSD. A linear ion trap mass spectrometer (LTQ-Velos, Thermo Scientific, USA) with a nano sprayer coupled to the Accela HPLC system (Thermo Scientific) was used for LC–MS/MS analysis [48 (link)]. The Xcalibur software v. 2.1 (Thermo Scientific) was used for tandem mass spectral data analysis. A chemically synthesized authentic compound of the cyclic peptide moiety of colistin (Peptron, Korea) was used to confirm the chemical structure of the metabolite using MS/MS fingerprinting.
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9

Quantification of 7α,25OHC in serum and tissues

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7α,25OHC levels were analyzed using a validated HPLC-MS method37 (link). Briefly, serum samples or tissue homogenates were placed in glass vials containing deuterated internal standards and dichloromethane, methanol and water in the presence of butylated hydroxytoluene (10 µg) and ethylenediaminetetraacetic acid (20 ng) to prevent oxidation. Following extraction, the lipid fraction was purified by solid phase extraction to remove cholesterol. The oxysterol fraction was analyzed by HPLC-MS using an LTQ-Orbitrap XL mass spectrometer (Thermo Fisher) coupled to an Accela HPLC system (Thermo Fisher). Chromatographic separation was performed using an Ascentis Express C-18 column (2.7 µm, 150 × 4.6 mm, Sigma), kept at 15 °C. Mobile phase was a gradient of methanol and water containing acetic acid. Calibration curves were prepared in the same conditions.
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10

Quantification of Short-Chain Fatty Acids in Cecal Content

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For SCFA analysis, the cecal content (50–60 mg wet material) was homogenized in water followed by sonication in an ice water bath. Acetonitrile was used for protein precipitation (in the presence of valproic acid as internal standard). Following centrifugation, the supernatant was recovered and a derivatization step (using 3-nitrophenylhydrazine in the presence of EDC and pyridine) performed. Samples were purified using liquid-liquid extraction to remove the remaining reagents. After evaporation, the final residue was analyzed using an LTQ Orbitrap XL mass spectrometer coupled to an Accela HPLC system (ThermoFisher Scientific). A Hypersil GOLD PFP (100 x 2.1 mm; 1.9 µm) column using a gradient of water-acetonitrile-acetic acid and acetonitrile-acetic acid allowed separating the different isomers. For ionization, an APCI probe was used in positive mode. Calibration curves were prepared using the same conditions to determine sample content. Xcalibur® software was used for data analysis. For each cecal content, an aliquot was freeze-dried to determine a dry residue that was used for data normalization.
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