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Seahorse xfe96 analyzer

Manufactured by Agilent Technologies
Sourced in United States, Germany

The Seahorse XFe96 Analyzer is a high-throughput instrument designed for real-time measurement of cellular metabolism. The analyzer uses microplates to assess oxygen consumption rate and extracellular acidification rate, providing insights into cellular bioenergetics.

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510 protocols using seahorse xfe96 analyzer

1

Measuring Cellular Oxygen Consumption

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Oxygen consumption was measured using a Seahorse XFe96 Analyzer (Agilent) at 20 °C similar to that described in an earlier study39 (link). 15 worms on Day 3 of adulthood, treated with or without chlorpropamide (100 μmol/L) as described in lifespan assay, were transferred into each well of a 96-well microplate containing 200 μL M9 buffer with 6 wells per group. Basal respiration was measured for a total of 90 min, at 9-min intervals that included a 3-min mix, a 3-min time delay, and a 3-min measurement.
Oxygen consumption of HL-7702 cells was measured using a Seahorse XFe96 Analyzer (Agilent) at 37 °C40 (link). Cells were cultured in 100 mm dishes with DMSO/chlorpropamide (200 μmol/L) for two days and seeded in XF96 V3 Cell Culture Microplates (Agilent) at 10,000 cells/well over night before the experiment. Succinate (10 mmol/L) with rotenone (2 μmol/L) was added to MAS with 0.2% (w/v) BSA as substrates. ADP (final concentration, 4 mmol/L), oligomycin (final concentration, 2.5 μg/mL), FCCP (final concentration, 1 μmol/L) and antimycin A (final concentration, 4 μmol/L) was added into different ports of Seahorse cartage. For permeabilization of cells, 0.001% digitonin was used. Each experimental group was analyzed using three or four replicates.
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2

Bioenergetic Analysis of Endothelial Cells

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Bioenergetic analysis in intact ECs was performed on a Seahorse XFe96 analyzer (Agilent Technologies, Santa Clara, CA, USA) using an XF Real-Time ATP Rate Assay Kit (103592-100, Agilent Technologies). Briefly, cells were seeded in the Seahorse XF96 cell culture microplates at 1 × 104 cells/well/80 µL and placed back in 37 °C, 5% CO2 incubator. After 24 h, cells were washed in assay media made up of Seahorse XF DMEM Medium, pH = 7.4 (103576-100, Agilent Technologies) containing 10 mM glucose, 1 mM pyruvate, and 2 mM L-glutamine and incubated for 1 h in a non-CO2 incubator at 37 °C before a final wash in the assay media. The Seahorse XFe96 analyzer was calibrated and the assay was run using a standard XF Real-Time ATP Rate template created using the WAVE Software (V2.6.1, Agilent Technologies) and assay standard drug injections were used of 1.5 µM oligomycin in port A and 0.5 µM rotenone/antimycin A in port B.
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3

Measuring Cellular Metabolism with Seahorse XFe96

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A Seahorse XFe96 Analyzer (Agilent Technologies) determined ECAR according to the manufacturer’s manual. Briefly, 1.5 × 105 cells were suspended in Seahorse XF RPMI Assay media (with 2 mM glucose and 2 mM glutamine) and seeded in poly-d-lysine–precoated XF96 microplates. The plate was centrifuged to immobilize cells and kept in a non-CO2 incubator for 30 min. A Seahorse XFe96 Analyzer (Agilent Technologies) measured the basal ECAR.
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4

Mitochondrial and Glycolytic Function Assay

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Mitochondrial respiration dynamics were measured via oxygen consumption rate (OCR) on a Seahorse XFe96 Analyzer (Agilent). Basal respiration was established followed by administration of 4 μM oligomycin to inhibit ATP synthase. Next, 4 μM FCCP was added to determine uncoupled respiration. Lastly, mitochondria complex I and III inhibitors rotenone and antimycin a were added to inhibit respiration.
Glycolytic activity was measured on a Seahorse XFe96 Analyzer (Agilent) via extracellular acidification rate (ECAR) of media, predominantly through excretion of lactate. 10 mM glucose was added to stimulate and measure glycolysis. Once reaching steady state, 1 μM oligomycin was added to inhibit ATP synthase. Lastly, 50 mM 2-Deoxyglucose (2-DG) was added to inhibit glycolysis.
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5

Glycolytic Rate Assay of MDA-MB-231/ADR Cells

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MDA-MB-231/ADR cells were seeded within culture plates of Seahorse XFe96 analyzer (Agilent, USA) overnight. Afterwards, oligomycin, Carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP), antimycin A/rotenone, and 2-deoxy-D-glucose were successively added to incubate the MDA-MB-231/ADR cells at 37°C for 30 minutes, according to instructions of glycolytic rate assay kit (Seahorse, USA). Extracellular acidification rate (ECAR) and oxygen consumption rate (OCR) were monitored on the Seahorse XFe96 analyzer (Agilent, USA).
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6

Worm Oxygen Consumption Assay

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Real-time oxygen consumption rates (OCR) and extra-cellular
acidification rate (ECAR) were measured with a Seahorse XFe96
Analyzer (Seahorse bioscience Inc., North Billerica, MA, USA) as
described28 . Briefly
100 L2–staged worms were sorted directly into individual wells of 96-well
Seahorse utility plates at a final volume of 200 ul of 10% M9. Acute effects of
pharmacological inhibitors FCCP (ETC accelerator) and sodium azide
(NaN3, Complex IV and V inhibitor) were evaluated by injecting
them during the run at final concentrations of 20 uM and 40 mM respectively.
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7

Worm Oxygen Consumption Assay

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Real-time oxygen consumption rates (OCR) and extra-cellular
acidification rate (ECAR) were measured with a Seahorse XFe96
Analyzer (Seahorse bioscience Inc., North Billerica, MA, USA) as
described28 . Briefly
100 L2–staged worms were sorted directly into individual wells of 96-well
Seahorse utility plates at a final volume of 200 ul of 10% M9. Acute effects of
pharmacological inhibitors FCCP (ETC accelerator) and sodium azide
(NaN3, Complex IV and V inhibitor) were evaluated by injecting
them during the run at final concentrations of 20 uM and 40 mM respectively.
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8

Measuring Metabolic Phenotype in PANC-1 Cells

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The basal metabolic level and metabolic phenotype were detected by using a Seahorse XFe96 Analyzer (Seahorse Bioscience, North Billerica, MA, USA). PANC-1 cells were seeded in a 6-well plate, and transfected with pcDNA3 or the hif-2α overexpression plasmid. After 48 h, cells were seeded at 2,5000 per well with eight wells per group for the experiments. Stress assessment was performed using 10 μM of oligomycin and 20 μM of Carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP). Experiments were performed according to the instructions of the XF cell energy phenotype test kit (Seahorse Bioscience).
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9

Measuring Mitochondrial OCRs with Seahorse

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Mitochondrial OCRs were measured using a Seahorse XFe96 analyzer (Seahorse Bioscience, North Billerica, MA, USA), which was equilibrated at 37°C overnight. 5×103 MLO-Y4 cells were seeded in a pre-coated XF96 plate and cultured overnight for adherence. On the same day of the experiment, 50 μL containing 1× mitochondrial assay solution (220  mM mannitol, 70  mM sucrose, 10 mM KH2PO4, 2 mM HEPES, 5 mM MgCl2, 1  mM EGTA, 0.2% BSA, and adjusted pH 7.2 with KOH) with 10 mM succinate and 2 μM Rot as substrates for the coupling assay was added to each well of the XF96 plate and followed by addition of PMP (Invitrogen) with a final concentration 2 nM. To assess various parameters of mitochondrial function, OCRs were measured after injecting ADP, OLIGO (a complex V inhibitor), FCCP (a protonophore and mitochondrial uncoupler), and AA (a complex III inhibitor). The final concentrations of drugs in the well were: ADP, 5 mM; OLIGO, 5 μM; FCCP, 5 μM; AA, 10 μM; and Rot, 2 μM. The OCR was measured using the Seahorse XFe96 extracellular flux analyzer (Andersen et al., 2019 (link); Au - Traba et al., 2016 (link)).
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10

Th17 Mitochondrial Respiration Profiling

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OCR and ECAR measurements were performed using a Seahorse XFe96
analyzer (Seahorse Biosciences). Seahorse XFe96 plates were coated with
0.56ug Cell-Tak (Corning) in 24 mL coating buffer (8 μL
H2O+ 16 μL 0.1M NaHCO3 (PH 8.0)) overnight at 4
°C, and washed 3x with H2O before use. In
vitro
cultured Th17 cells were collected at 96 h, washed twice
in Seahorse RPMI media PH7.4 (Agilent, 103576-100) and seeded onto the
coated plates at 100,000 per well. To measure the OCR and ECAR of KA-treated
cells, 30 μM KA (Santa Cruz) was added into Olfr2control Th17 cell samples at the beginning of the Seahorse measurement.
Respiratory rates were measured in RPMI Seahorse media, pH7.4 (Agilent)
supplemented with 10 mM glucose (Agilent) and 2 mM glutamine (Agilent) in
response to sequential injections of oligomycin (1 μM), FCCP (0.5
μM) and antimycin/rotenone (1 μM) (all Cayman Chemicals, Ann
Arbor, MI, USA).
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